Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00929X
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450...    29   2.6  
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314...    28   4.5  
01_01_1108 + 8758486-8758815,8758913-8758960,8761512-8761664,876...    28   4.5  
07_03_1393 - 26245105-26246862                                         28   5.9  
06_01_0005 - 125809-126339                                             28   5.9  
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914...    27   7.8  
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142...    27   7.8  

>03_01_0612 -
           4501595-4501619,4501752-4501906,4502051-4502092,
           4502238-4502279,4502365-4502464,4502825-4502889,
           4503140-4503217
          Length = 168

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 329 RLDIRGEDRQLCTEMHERVRERN--LRGARGLHLSRASGPQTRTL 457
           +LD++GED   C  + E + E +  LR  RG  L R +  Q + L
Sbjct: 22  QLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQEL 66


>04_04_1335 -
           32730516-32730570,32730655-32731154,32731235-32731416,
           32732673-32732779,32733364-32733395,32733499-32733542,
           32733816-32733977,32734356-32734755
          Length = 493

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 73  IASEREHRAMLCGNVLSVLLFVIGERSLFCDAIKDGK 183
           +A +  HR  L  +VLSV +F     +   DAIK GK
Sbjct: 421 VADQVGHRVRLSPSVLSVFVFSSAAIAFTYDAIKSGK 457


>01_01_1108 +
           8758486-8758815,8758913-8758960,8761512-8761664,
           8761749-8761847,8761884-8761991,8762078-8762200,
           8763030-8763287
          Length = 372

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 317 IMQDRLD-IRGEDRQLCTEMHERVRERNLRGARGLHLSRASGP 442
           IM+DRL+ + G +  +  E   R  ER LRGA   H   A+GP
Sbjct: 275 IMKDRLEGMTGANYLVIHEKLTRASERWLRGASLEHREAAAGP 317


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 354 DSCVPKCTSGCVNGTCEAPEVCTCPEPLVL 443
           D      T+  VNGTC+      C +P VL
Sbjct: 127 DQATATATAAAVNGTCDPDAPLNCSDPRVL 156


>06_01_0005 - 125809-126339
          Length = 176

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 165 CHKRWERSCHRGRTG 209
           CH+RW R   RGR G
Sbjct: 156 CHRRWRRRARRGRGG 170


>07_01_1046 -
           9138000-9138293,9139550-9139714,9139862-9140010,
           9140363-9140510,9140659-9140727,9140827-9141087,
           9141498-9141692,9142932-9143048,9143701-9144477
          Length = 724

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 415 SAPVQSLWSSDADTAWSPRVHQPVTPTAAAPIQRVHLREQHDRFERLPV 561
           S PV+++   D  + W P   Q   P  A+P   +HL  Q+   E+ P+
Sbjct: 128 SVPVENITPGDTVSGWFPISGQYSNPMKASP--ELHLSIQYKPIEQNPL 174


>03_02_0735 +
           10811326-10812342,10813199-10813555,10813962-10814225,
           10814894-10815010,10815796-10815944,10816315-10816606,
           10816681-10816845,10817106-10817357
          Length = 870

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 367 RNARAGA*TELARRQRSAPVQSLWSSDADTAWSPRVHQPVTPTAAAP 507
           +  +A A   +ARRQ   P  SL +    +  +P   Q  TP+A  P
Sbjct: 127 KERKANAAAVVARRQALTPAPSLVTHPPHSPSTPEKTQAATPSATQP 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,790
Number of Sequences: 37544
Number of extensions: 329612
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)