Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00927
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FH95 Cluster: FATC domain containing protein; n=1; Tr...    34   3.4  
UniRef50_Q705F3 Cluster: Regulatory protein E2; n=2; Bovine papi...    34   3.4  

>UniRef50_A2FH95 Cluster: FATC domain containing protein; n=1;
           Trichomonas vaginalis G3|Rep: FATC domain containing
           protein - Trichomonas vaginalis G3
          Length = 2082

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 201 NHNKECLPHTIRFFSFLGKEKIQY*NHVTQNVF 299
           N+N + L  T++    LGK K+++ NH  QN+F
Sbjct: 726 NNNSKLLIKTLKVIGCLGKNKVEFMNHKKQNIF 758


>UniRef50_Q705F3 Cluster: Regulatory protein E2; n=2; Bovine
           papillomavirus - 3|Rep: Regulatory protein E2 - Bovine
           papillomavirus type 6
          Length = 435

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 384 KCFRTRLTHLYGYKLSTLIYSYVVSF*NETHFGLHDFNIVFSLFLEMKKILLYAVNIP 211
           KCFR R +H + +K   +  S+  S    TH   H   + FS + E ++  L  V +P
Sbjct: 366 KCFRRRTSHAHPHKFLCMSTSWTWSCKTTTHKSCHRMLVAFSDY-EQRRCFLAGVKLP 422


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,472,113
Number of Sequences: 1657284
Number of extensions: 10125497
Number of successful extensions: 18600
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18587
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)