Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00927
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   7.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.1  

>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 34  NYSKLGYFNCCKKSVDFHYQ 93
           +Y K+  F  C  SVDFH++
Sbjct: 411 SYKKIIIFLSCSDSVDFHFE 430


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 242 KKSYCMR*TFLIVVLTLKYKNIKLNLFCTISNYNKHHFHSTIFL 111
           K+ Y +    L + +   + N  +++ C + NYN   F   +FL
Sbjct: 24  KEKYKIIHRLLYISIIFLFLNYVVDIVCYVKNYNGFSFFCWVFL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,568
Number of Sequences: 5004
Number of extensions: 49733
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)