Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00927
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459...    29   2.4  
12_02_0154 + 14494319-14495857                                         27   9.7  
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    27   9.7  

>05_04_0012 +
           17145112-17145205,17145681-17145752,17145832-17145911,
           17146059-17146175,17146282-17146363,17147086-17147141,
           17147258-17147560,17147658-17147744,17148118-17148292,
           17148370-17148491,17149028-17149191,17149277-17149531,
           17150419-17150540,17150656-17150777,17151302-17151450,
           17151565-17151703,17151831-17151866
          Length = 724

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 573 CPLLSFIIKLNKYVKDFLL 629
           CP+LSF+ KLN YV  F+L
Sbjct: 78  CPVLSFVNKLNIYVVKFML 96


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  LQKVCRFSLPIHGIINEKYGR 125
           LQ++CR  + IH ++ E  GR
Sbjct: 35  LQRICRMLIKIHSVVEEAKGR 55


>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 NKECLPHTIRFFSFLGKEKIQY*NHVTQNVFHFK 308
           N  C+P     F FLGK+ I+Y N V   +  +K
Sbjct: 665 NVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYK 698


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,616
Number of Sequences: 37544
Number of extensions: 221995
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)