Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00926X
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    33   0.024
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   2.7  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.3  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 286 NGKPPIKMQYNKHTSKITG-----GFFSLGGTIKYNLHD-FYDMTFYNTVSNHTGCDAN- 444
           +G P   M YN  T   TG     G  SLGG  KYN       +T   T++  +G   N 
Sbjct: 76  SGGPGFSMNYNARTGAFTGGPNAAGLSSLGG--KYNTSSTTTTLTTSTTLNTSSGTTLNS 133

Query: 445 TLKTTTSS 468
           T KTTTSS
Sbjct: 134 TSKTTTSS 141


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 515 IFRQFLEAGTGLACMLLDVVVFKVLASQPVW 423
           IF + LE G G+A  +LD +  + LA    W
Sbjct: 143 IFLELLETGVGIASEMLDTISPQYLADLICW 173


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 265 SYLVGETNGKPPIKMQYNKHTSK-ITG-GFFSLGGT 366
           SY+  E N + P+K  Y K  S  +TG G  +LG T
Sbjct: 285 SYIAYENNSETPLKFSYAKGVSYFLTGKGIATLGWT 320


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 400 TFYNTVSNHTGCDANTLKTTTSSSMHAKPVPASRNCLKMRP*RSQNQDLL 549
           +F  T+S+ T     T+  ++SSS  +  VP+S   L +   ++ N   L
Sbjct: 239 SFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,554
Number of Sequences: 5004
Number of extensions: 45424
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)