Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00924
         (766 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6G082 Cluster: Penicillin-binding protein 1A; n=1; Ple...    34   4.4  
UniRef50_A6EBF3 Cluster: Site-specific recombinase; n=1; Pedobac...    34   4.4  
UniRef50_Q0AZK0 Cluster: Galactose-1-phosphate uridylyltransfera...    33   7.8  
UniRef50_Q07492 Cluster: Expression site associated gene protein...    33   7.8  

>UniRef50_A6G082 Cluster: Penicillin-binding protein 1A; n=1;
           Plesiocystis pacifica SIR-1|Rep: Penicillin-binding
           protein 1A - Plesiocystis pacifica SIR-1
          Length = 896

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 186 SAFAEDSPQWIEEICPNGYQMDVLEYAVRCGTTITNTIMVIKLKII 323
           ++  EDSP+  E+  P  Y+ DV    +R    +TN++  + +K++
Sbjct: 538 ASLIEDSPEIYEKWRPTNYERDVYRGEIRMRVALTNSVNTVAIKLL 583


>UniRef50_A6EBF3 Cluster: Site-specific recombinase; n=1; Pedobacter
           sp. BAL39|Rep: Site-specific recombinase - Pedobacter
           sp. BAL39
          Length = 519

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 595 PKCHRELNVMSSRRKKKHWKFLHFFAHSFNKYN-LQVNFNF*KPL 464
           PKCHR L    S+ K KH+ + H  +    +YN L+ N  F K L
Sbjct: 288 PKCHRMLTGSKSKGKYKHYYYYHCLSECGVRYNALEANDLFLKQL 332


>UniRef50_Q0AZK0 Cluster: Galactose-1-phosphate uridylyltransferase;
           n=1; Syntrophomonas wolfei subsp. wolfei str.
           Goettingen|Rep: Galactose-1-phosphate
           uridylyltransferase - Syntrophomonas wolfei subsp.
           wolfei (strain Goettingen)
          Length = 116

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +3

Query: 99  GVYSRSRKPEINKHGAEILQPAQVAVVMKSAFAEDSPQWIEEICPNGYQMDVLE 260
           G Y R  K      G E L P ++A V K     DSP WI    P+ Y    LE
Sbjct: 33  GTYVRKDKVCPFCAGNESLTPPEIAAVRKDNSVPDSPGWIVRTVPSKYSAFKLE 86


>UniRef50_Q07492 Cluster: Expression site associated gene protein;
           n=10; Trypanosoma|Rep: Expression site associated gene
           protein - Trypanosoma brucei
          Length = 686

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +3

Query: 60  STLIVLIWFVFMLGVYSRSRKPEINKHGAEILQPAQVAVVMKSAFAEDSPQWIEEICPNG 239
           +TLI ++  +F + +  R  +P ++ H   +L    +  V        +   I  +CP+G
Sbjct: 517 TTLIEIVSSIFDIIIVERWNRPYVSDHVVFVLGDQIIHQVCYMMHFMPTVILISRLCPSG 576

Query: 240 YQMDVLEYAVRC---GTTITNTIMVIKLKIIQEENVQIKL 350
           Y+  V      C   G +++NT+  + ++ +      IK+
Sbjct: 577 YESAVYSVLAGCAHFGRSVSNTLGWLLMEYVWNVQSDIKV 616


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,143,757
Number of Sequences: 1657284
Number of extensions: 13091983
Number of successful extensions: 28251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28245
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)