Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00924
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   3.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.9  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    26   5.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   6.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.8  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 130 ISGFREREYTPNMNTNQIKTINVDFIF 50
           I+G+ EREY PN   NQ    N   I+
Sbjct: 85  ITGYAEREYVPNFVFNQEYYANTHAIY 111


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 124 GFREREYTPNMNTNQI 77
           GFR RE+ P + TNQI
Sbjct: 458 GFRSREFVPPVRTNQI 473


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 133 FISGFREREYTPNMNTNQIKTINVDFIFNINCSNI 29
           +I G RE+E     + +++  +N+D    + CSN+
Sbjct: 53  YIRGIREQELFIYDSVSELMDLNIDITIAMPCSNL 87


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 197 GEGTLHDNCNLRRLKN 150
           GEG L+DN N+ +LKN
Sbjct: 230 GEGCLNDNDNISKLKN 245


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 5   VPNLEHSDNIATVY-IKYEVN 64
           VPN EH+DN+ T   I+YE +
Sbjct: 97  VPNKEHTDNVTTSQTIRYETS 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,501
Number of Sequences: 5004
Number of extensions: 59408
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)