Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00924
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U14521-1|AAA64269.1|  360|Caenorhabditis elegans ppp-1 protein.        28   8.4  
AC006608-3|AAF39757.1|  404|Caenorhabditis elegans Pyrophosphory...    28   8.4  

>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
 Frame = +3

Query: 261 YAVRCGTTITNTIMVIKLKIIQEENVQIKLCVITRLF*INVAKKCFFY*FC*IECHNQRP 440
           Y + C  T    +++  + IIQ  +    LC+   LF I      ++      E      
Sbjct: 17  YFLNCTNTTNQCVLIQDVGIIQAIDFWANLCIPFTLFVIAFILNGYYLSILIPEFRKMND 76

Query: 441 APR---IYVTNSGF*KLKFTCKLYLLKE*AKKCKNFQCF--FFLLDDITFNSL 584
             +   I+V + G   L  +  + +L+       +F  +  FFL+DD++F SL
Sbjct: 77  TTKKQYIFVVSRGISSLSASSIMMVLRLLKMLSTSFTVYFLFFLIDDLSFYSL 129


>U14521-1|AAA64269.1|  360|Caenorhabditis elegans ppp-1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/85 (23%), Positives = 33/85 (38%)
 Frame = +3

Query: 84  FVFMLGVYSRSRKPEINKHGAEILQPAQVAVVMKSAFAEDSPQWIEEICPNGYQMDVLEY 263
           F++ L    R+   +I     E+LQ      V KS   E  P  IE IC N       + 
Sbjct: 37  FLYPLSSLLRTGITDIKIFVREVLQLTLEKEVKKSKLLEKYPAHIEYICVNQEDFGTADL 96

Query: 264 AVRCGTTITNTIMVIKLKIIQEENV 338
                + IT   +++    I + ++
Sbjct: 97  LKNHHSKITKDALIVSCDFISDASL 121


>AC006608-3|AAF39757.1|  404|Caenorhabditis elegans
           Pyrophosphorylase family protein 1 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/85 (23%), Positives = 33/85 (38%)
 Frame = +3

Query: 84  FVFMLGVYSRSRKPEINKHGAEILQPAQVAVVMKSAFAEDSPQWIEEICPNGYQMDVLEY 263
           F++ L    R+   +I     E+LQ      V KS   E  P  IE IC N       + 
Sbjct: 37  FLYPLSSLLRTGITDIKIFVREVLQLTLEKEVKKSKLLEKYPAHIEYICVNQEDFGTADL 96

Query: 264 AVRCGTTITNTIMVIKLKIIQEENV 338
                + IT   +++    I + ++
Sbjct: 97  LKNHHSKITKDALIVSCDFISDASL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,440,482
Number of Sequences: 27780
Number of extensions: 336696
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)