Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00923
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.68 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 694 NFIEVLNSFGAIHQDVGAGTLGAKAPNLTGFGNIVFV 584
           +F   +   G  H  V AG +GA+ P+   +GN V V
Sbjct: 888 SFNHFVLKMGINHGPVTAGVIGARKPHYDIWGNTVNV 924


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 126 HHFQECPQHEGDEIQCITSRACRC 197
           HH    P+  G +++ I   AC C
Sbjct: 464 HHHPHPPETPGPQVETILQNACFC 487


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 654 RMLAPVPSGPKHQILRASVTSYSYFSVRY 568
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 654 RMLAPVPSGPKHQILRASVTSYSYFSVRY 568
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,424
Number of Sequences: 438
Number of extensions: 4281
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)