Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00920X
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    38   7e-04
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    34   0.011
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   0.75 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   1.7  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    27   1.7  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   3.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   4.0  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   5.3  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    25   7.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.2  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 21/71 (29%), Positives = 41/71 (57%)
 Frame = +1

Query: 262 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 441
           +A+V Q+ S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+
Sbjct: 90  KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149

Query: 442 LVTERITLADV 474
           LV  R+TLAD+
Sbjct: 150 LVGSRLTLADI 160



 Score = 31.9 bits (69), Expect = 0.061
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 116 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 232
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +1

Query: 262 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 435
           +A + +W  + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  R
Sbjct: 93  EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152

Query: 436 TFLVTERITLADVIVFSTLLHAF 504
           T+LV +R TLAD + F +LL  F
Sbjct: 153 TYLVGDRFTLAD-LFFGSLLRIF 174



 Score = 30.3 bits (65), Expect = 0.19
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +2

Query: 5   GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 184
           G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  ADG
Sbjct: 4   GTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADG 60

Query: 185 KVLLTESNAIAYY 223
              L+E  AI  Y
Sbjct: 61  -FELSEVIAIVKY 72


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 389 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 481
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 23  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 202
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 203 SN 208
           SN
Sbjct: 612 SN 613


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 197 TESNAIAYYVANESLRGGDRLPKPVSGSGHHGLTVNYCLLPVLGSSLT 340
           T SN ++  + +E  +  + LPK +   G      NY ++ VLGS  T
Sbjct: 3   TASNRVSTQIVDEHKQFNNELPKFMQSVGLLDAGFNYHVVAVLGSQST 50


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 STFPSALSNAGTFPAGNFFKKSSDL 118
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 299 VNYCLLPVLGSSLTLVSCNSTNRML 373
           V + L+P LG  L + SCN+  R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 25/78 (32%), Positives = 33/78 (42%)
 Frame = +2

Query: 77  DVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDR 256
           D K   N  FG+ + SE+FLK+     + A E         ES+AI     N  L G   
Sbjct: 249 DGKKFANIDFGDYSSSEEFLKEHL--NILADEE--------ESDAILLEAFNAELEGKPS 298

Query: 257 LPKPVSGSGHHGLTVNYC 310
           L K      H  L ++YC
Sbjct: 299 LAKQYV---HQALLISYC 313


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 257 LPKPVSGSGHHGLTVNYCLLPV 322
           LP  +SG G+  L+V Y  +PV
Sbjct: 309 LPAIISGMGYTSLSVQYMTIPV 330


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -1

Query: 218 KRWHCFQLGALFHRHFRMQALFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 39
           K W     G ++H+   ++    Q   +R     W  QI   +   ++S N++R     K
Sbjct: 523 KNWGDVSQGIIYHQ---LRKYLLQTNKARENIKFWRPQILLLINNPNRSENVIRFCNSLK 579

Query: 38  RGS 30
           +GS
Sbjct: 580 KGS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,238
Number of Sequences: 5004
Number of extensions: 49757
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)