Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00919
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.052
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +1

Query: 511 LTIRRVTVGDSGVYVCHADNLYSSHESSVQVTVKALTTPAKCTDNPFFADCSLIVRSKFC 690
           L I  +   D G+Y C A +   S + S ++ V  L            A  +LIV   F 
Sbjct: 476 LNITAIHTNDGGLYRCVASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGTLIVHCPFA 535

Query: 691 KH 696
            H
Sbjct: 536 GH 537



 Score = 27.9 bits (59), Expect = 0.091
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 511 LTIRRVTVGDSGVYVCHADNLYSSHESSVQVTVKALTTPAKCTDNP 648
           L IR   V DSG Y+C  +N  S    SV+ TV  +T P K    P
Sbjct: 292 LIIREAKVEDSGKYLCVVNN--SVGGESVE-TVLTVTAPLKAKIEP 334



 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 383 GAELSLPCEVDGYPQPENVYWSKDGVRIASGD 478
           G++ ++ C+ DG+P+P  V W K    ++ GD
Sbjct: 713 GSDAAVECKADGFPRPV-VTW-KRATGVSPGD 742



 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 511 LTIRRVTVGDSGVYVCHADNLYSSHESSV-QVTVKA 615
           LTI  +   + G Y+C A N   S  S+V Q++V+A
Sbjct: 760 LTINNIQKTNEGYYLCEAVNGIGSGLSAVIQISVQA 795



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 371 TLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDNIWISGTSVSV 511
           ++  G  +S+ C V     P N+ W+ +G  I   + I I+  S  V
Sbjct: 614 SINEGDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRASKRV 660


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 688 CKHHYYSNFCCKSC 729
           CK  Y    CCK+C
Sbjct: 788 CKRIYNEKQCCKNC 801


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 450 LDQYTFSGCGYP 415
           L Q+ F GCG+P
Sbjct: 572 LAQFNFCGCGWP 583


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 453 SLDQYTFSGCGYP 415
           +L ++ F GCG+P
Sbjct: 570 ALSEFNFCGCGWP 582


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,755
Number of Sequences: 336
Number of extensions: 3420
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)