Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00919
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 32 0.56
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 31 0.97
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010... 29 3.9
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 29 3.9
02_05_0521 - 29726985-29727605 29 3.9
05_05_0355 - 24359265-24359888 28 6.9
04_03_0799 - 19805190-19805749,19806316-19806403 28 6.9
01_01_0855 - 6666854-6666969,6667107-6667230,6667679-6667849,666... 28 6.9
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 28 9.1
01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440... 28 9.1
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 31.9 bits (69), Expect = 0.56
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 238 WTRRRSPPAPHRHYHCCPHHSSRSRFQRSP-VYRAGVDKDIVGAPDADRGRRTESALRSG 414
W RSPP CCP SR RSP RAG+DK A + A+R
Sbjct: 151 WNADRSPPWWSPSRWCCPR---GSRIPRSPWQIRAGIDKQGAAADAGELLSGQVKAVRKP 207
Query: 415 W 417
W
Sbjct: 208 W 208
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 332 TAPVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDN 481
++P T S PP A L +P + YP +N+ +G ++SG N
Sbjct: 1398 SSPAETSFSSPPPATQFSAPLMVPT-IQRYPSMDNITTPNNGSGLSSGSN 1446
>06_03_0901 -
25800317-25800403,25800420-25800674,25800817-25801043,
25801773-25801929,25802977-25803159
Length = 302
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +1
Query: 253 SPPAPHRHYH-----C-CPHHSSRSRFQRSPVYRAGVDKDIV-GAPDADRGRRTESALRS 411
SPP+PH H+H C PH + G+D ++ GA DA G +SA++S
Sbjct: 22 SPPSPHSHHHPAKRSCRSPHRRREAHLHHLSSLFPGMDPQLLEGALDAS-GDDLDSAIKS 80
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 211 PARGSTCG*WTRRRSPPAPHRHYHCCPHHSSRSRFQRSPVYRA 339
P G CG RR P+P H HH R Q +P R+
Sbjct: 140 PHAGYNCGGGGRRAPSPSPQMHAASRRHHHGRHHQQVAPKARS 182
>02_05_0521 - 29726985-29727605
Length = 206
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +1
Query: 238 WTRRRSPPAPHRHYHC--CPHHSSRSRFQRSPV---YRAGV 345
W PPAP R + C CP R RF RS + YRA V
Sbjct: 18 WALAPPPPAPERRFCCPYCPEGPQRGRF-RSHLRRHYRAAV 57
>05_05_0355 - 24359265-24359888
Length = 207
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 468 AILTPSLDQYTFSGCGYPSTSQGRLSSAPAVSVGGADNILVDTGAVNRGTLKSR 307
A P + + +G G PST AP+ + GG D + A G + SR
Sbjct: 68 AAAPPLVPVHAAAGHGVPSTKSFNEGPAPSTTGGGDDGHAIFAAAAAAGRVSSR 121
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 28.3 bits (60), Expect = 6.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 256 PPAPHRHYHCCP 291
PP+ H+ YHCCP
Sbjct: 116 PPSTHQCYHCCP 127
>01_01_0855 -
6666854-6666969,6667107-6667230,6667679-6667849,
6668171-6668276,6668356-6668532,6669213-6669442
Length = 307
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -2
Query: 492 LIHMLSPDAILTPSLDQYTFSG----CGYPSTSQGRLSSAPAVSVGGADNIL 349
++ SPD + S YT++G C + S G S+PA+SVG + N++
Sbjct: 138 VVKATSPDG--SSSFTAYTYAGELPTCAFGFNSNGVRVSSPAMSVGHSYNLM 187
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 565 RRGTRTLRYLRPSLGVSSDGNTSSTYPYVVSG 470
RRG RT+ Y P L ++DG SS + G
Sbjct: 527 RRGVRTMTYCNPCLVPANDGIKSSVVGLLTGG 558
>01_01_0591 -
4401847-4402063,4402860-4403002,4403339-4403447,
4403546-4404707,4405754-4405865,4405980-4406015
Length = 592
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 244 RRRSPPAPHR-HYHCCPHHSSRSRFQRSPVYRAGVDKDIVGAPDADRGRRTE 396
RR PPA R Y C H S SR + A D ++ D D T+
Sbjct: 150 RRARPPASSRPRYKCYSHPPSPSRGDATAAAAATDDDELFPGTDTDTDTNTD 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,601,902
Number of Sequences: 37544
Number of extensions: 403155
Number of successful extensions: 1498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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