Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00918
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    30   0.31 
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    30   0.42 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    28   1.3  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   6.8  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   9.0  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    25   9.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   9.0  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
 Frame = +3

Query: 300 ESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSP---GLSTPPKTRRC 470
           E+KYPT  P+   +  + P    T A     ++   S+S    T+P   G     +  R 
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTA-----NSSSASISSLHNTTPDGEGKYRSVQNGRA 305

Query: 471 LRIF*KF**HSKSERDLVKRAYTMEPGTNCPQT*RPRRNSAQKWSLPTQGQST 629
           L     F   S S +D + ++YT EPG    ++     NS   +  P Q  +T
Sbjct: 306 LNYVSSFNSDSHSPKDYISQSYTNEPGLK-KESADSFNNSIDSYISPNQSPNT 357


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 245 TKASYPVKVIHFSFSPVIDVVYQP-STNRYL 156
           T+   PVK  H+  SPV DV Y P  TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 216 SLFLLPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 49
           SL ++P N  GV  LY  +    G Y   V+   D T   L  +    L  R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723

Query: 48  V 46
           +
Sbjct: 724 M 724


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 436 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 299
           GD+ S PL D P  D  +      +  G++ + +   D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +3

Query: 147 HLVKIPIGRGLVHHVDYWGEGKVNNLDRVRGFRRSYM*TNSLRSSVRATARESK 308
           +L++  + R L+H VDY G+  +  LD +   R S +  +SLRS ++   ++ K
Sbjct: 72  NLLRKTLNRPLLHEVDYHGK-SLEILDMLLQSRNSMI--SSLRSELQEKNQKDK 122


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/84 (20%), Positives = 35/84 (41%)
 Frame = +3

Query: 33  SQVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGK 212
           S+V+ P E   +      Y++  +      PI YFG+ H + + +   L+H + ++    
Sbjct: 646 SEVRIPVELAVKELENVIYNSKYEDHGKNLPINYFGLDHFIHLRVWYVLLHKIYFFIASA 705

Query: 213 VNNLDRVRGFRRSYM*TNSLRSSV 284
             +L   +     Y+    LR  +
Sbjct: 706 YFSLKNEKFENEFYLLAQDLRRKI 729


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 227 VKVIHFSFSPVIDVVYQPSTNRYLHEVVHTEVG 129
           V  ++F+    ID  Y  S  +YLHE ++ + G
Sbjct: 45  VAAVYFAKPSPIDENYPRSVAKYLHEALYRQKG 77


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = -2

Query: 684 TVFTALM*SPPVTKLYK*SLIDLASAKTIFVPNSVWVFKSAGSSY 550
           ++FT ++  PPV+  +   ++   S+ +   P  + +F    S Y
Sbjct: 14  SIFTVVVSEPPVSAKFAKRVLSATSSSSSTCPEFITIFSEGPSEY 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,981
Number of Sequences: 5004
Number of extensions: 68858
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)