Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00918
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0170 + 1389759-1391159                                           31   1.0  
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    30   2.3  
01_02_0040 - 10496431-10496463,10497278-10498708                       29   3.1  
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    28   7.1  
01_06_1239 + 35652053-35654050                                         28   9.4  

>03_01_0170 + 1389759-1391159
          Length = 466

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 309 ICFPLLWPLLTSANCSFTCSSDESLLPCQGYSLFLLPSNRRGVP 178
           +  PLL  LL SA+ +    +D  LL C   +  +LP  RR VP
Sbjct: 5   LAVPLLLCLLASASAARFAPADNHLLACGATAPAVLPDGRRFVP 48


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 359 NWKCRCRPQTRRESCWVF 306
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>01_02_0040 - 10496431-10496463,10497278-10498708
          Length = 487

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -1

Query: 529 LFTKSRSDFECHQNFQNIRRQRRVFGGVDNPGDVCSAPLTD 407
           LF     DF  H     +RR R    G+ N GDV    L D
Sbjct: 88  LFIAQPDDFYFHALQPGLRRSRAAVAGLVNAGDVAEVSLVD 128


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 589 RHKNGLCRRKVNQRSLVQLGYGRRLHQR-GEDCAQLDDNQGSGVCRDVVSRL 741
           RH N L   ++ ++  +  G+G +L +R  ED    DDN+G    +DV+S L
Sbjct: 454 RHLNVLTWPEILRQFALSAGFGPQLKKRNAEDVYYRDDNEGHD-GQDVISTL 504


>01_06_1239 + 35652053-35654050
          Length = 665

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -2

Query: 585 SVWVFKSAGSSYPAP*YKPFLPSHARILNVIRIFRISVGNDESSEALTILATSAAHRLLI 406
           SVWV  S  SS P    KP  P H R  +V  +  +      +  A  + A  + HR  +
Sbjct: 35  SVWVNPSLPSSQPFHRRKPAEPQHQRQDHVPDLPALLAALSAARTASDLAAAVSPHR-PV 93

Query: 405 GPVLMVTVLT 376
            P L+ T+L+
Sbjct: 94  SPRLLGTLLS 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,738,183
Number of Sequences: 37544
Number of extensions: 494961
Number of successful extensions: 1444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)