Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00918
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   8.4  
CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 557 LPADLKTQTEFGT-KMVFADARSIND-HLYNLVTGGDYINAV 676
           +P +LK  T  GT KM F DA+ IND +  N   G +++N +
Sbjct: 235 VPKELKYVTTMGTEKMAFLDAKVINDIYCPNACQGRNHLNCL 276


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/96 (25%), Positives = 41/96 (42%)
 Frame = -2

Query: 570 KSAGSSYPAP*YKPFLPSHARILNVIRIFRISVGNDESSEALTILATSAAHRLLIGPVLM 391
           K A + YP   +   L     I+NVI    I++  D+ +E L     S    ++ G +L 
Sbjct: 194 KHAAAIYPIRCHGNRLLCTVIIMNVIVNTGITLLFDDLAEGLIAFVASTVGIVVFGEILP 253

Query: 390 VTVLTPPSLM*LEVSLSSTDTTGILLGICFPLLWPL 283
            ++     L    V  ++   T   + + FP+ WPL
Sbjct: 254 QSICVKYGLA---VGANTIFITKFFMFLLFPITWPL 286


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 445  DNPGDVCSAPLTDRPRADGNSF----NAAVSDVTGSVAVVHRH-DGNPV 314
            D   D C+ PL  +P  +GN +     A +++  G+ A + R+ +GN V
Sbjct: 1501 DRSNDSCTQPLLAKPHINGNGYEPLKGAVIANGNGATATMMRNGNGNGV 1549


>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = -2

Query: 501 NVIRIFRISVGNDESSEALTILATSAAHRLLIGPVLMVTVLTPPSLM*LEVSLSSTDTTG 322
           NVI    IS+   E +  +  L  S    ++ G +L  ++     L   EV   +   T 
Sbjct: 269 NVIVNSAISILMGELTTGIYALIGSTMGIVIFGEILPQSICVKKGL---EVGAHTISITQ 325

Query: 321 ILLGICFPLLWPLLTSANC 265
           + + + FP+ WP+    +C
Sbjct: 326 LFIFLTFPIAWPVSKLLDC 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,791
Number of Sequences: 27780
Number of extensions: 403926
Number of successful extensions: 1249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)