Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00917
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    54   2e-08
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    31   0.20 
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   3.3  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.6  

>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
 Frame = +1

Query: 1   EVCFISKVPSERRGIPHQ---VSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEA 171
           ++CF++ +        H+   V L+  +G +A  Y  + +A  L+P+E +++R  D  E 
Sbjct: 98  DICFLNTLTPGAIESEHKKRSVKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEE 157

Query: 172 IVQDFTLMRKREEEMRDTNESTNNRV 249
           I      ++ RE   R+TNESTN RV
Sbjct: 158 IKGKIYYLQAREARFRNTNESTNERV 183



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 279 LLGLATWQVLYLRRFFKAKKLI 344
           L  L  WQ+LYLR FF+ K LI
Sbjct: 194 LFVLVIWQILYLRSFFQRKHLI 215


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 166 EAIVQDFTLMRKREEEMRDTNESTNNRVL 252
           E+I+ +  L R RE   RDT+ES N+RV+
Sbjct: 156 ESILGEQMLQRSREMTFRDTSESANSRVV 184


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 82  EAKTYEGIGEAAKLKPMEVELKRLEDLSE 168
           E +  + IGEA K KP  +EL++LE   E
Sbjct: 226 EGRAAQLIGEAIKNKPGFIELRKLETARE 254


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 502 KSPEECSQCCEKT-AHYNINYHRL*QKRSKKKKNR 401
           KSPE C +  EKT A Y+ N  R  + + KK+K R
Sbjct: 446 KSPESCRKQYEKTIASYSSN-QRQEEDQGKKRKKR 479


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 MEVELKRLEDLSEAIVQDFTLMRKREEE 213
           M++ L RLE LSE   + F  + KRE E
Sbjct: 654 MQILLPRLEQLSEFNSEKFKTVSKREVE 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,580
Number of Sequences: 5004
Number of extensions: 40608
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)