Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00917
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 53 2e-07
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 53 2e-07
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 43 3e-04
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 29 3.4
01_01_0593 + 4416283-4417403,4417516-4417927 29 4.5
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 28 6.0
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 28 6.0
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 28 7.9
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/75 (30%), Positives = 46/75 (61%)
Frame = +1
Query: 25 PSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKR 204
P + + D + G+ AK + + + ++ ME+ELK+LE+ ++I ++ +R+R
Sbjct: 124 PDHKPPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYLRER 183
Query: 205 EEEMRDTNESTNNRV 249
EEEM++ N+ TN+R+
Sbjct: 184 EEEMQNLNKQTNSRM 198
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/62 (37%), Positives = 40/62 (64%)
Frame = +1
Query: 64 DIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNN 243
D + G+ A+ + + + ++ MEVELK+LED +I ++ +R REEEM++ N TN+
Sbjct: 139 DWRSGVSARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNS 198
Query: 244 RV 249
R+
Sbjct: 199 RM 200
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +1
Query: 40 GIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMR 219
G P VS I +G + + L P+ V++ L++ E++ + ++ RE R
Sbjct: 107 GAPETVSFYIHVG-HIPNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHR 165
Query: 220 DTNESTNNRVLFSVYSRWRA 279
TNEST RV+F + + A
Sbjct: 166 HTNESTRRRVMFYTIAEYLA 185
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 132 GSGTEETRRPIRSYRSRFHTNEEKRRRNERYQ*INE 239
GSG EE R+ + + R R E +RRR++ + + E
Sbjct: 85 GSGAEERRQSVAAERRRSQEEEWERRRSQEEEAVRE 120
>01_01_0593 + 4416283-4417403,4417516-4417927
Length = 510
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 223 TNESTNNRVLFSVYSRWRASWVWPPGKSC 309
T S N R++FS+Y+ R +W GK C
Sbjct: 396 TKVSRNTRIIFSLYAMGRIEGIW--GKDC 422
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 269 DGVPLGSGHLASPVPSQV 322
DG PLG G LA P PS +
Sbjct: 385 DGTPLGGGSLAPPFPSPI 402
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 79 IEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRK 201
IE K EGIG LK + +++ RLE + A + ++ K
Sbjct: 507 IEGKIPEGIGNLINLKLLYMDINRLEGIIPASLGKLKMLNK 547
>01_01_0608 -
4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/73 (19%), Positives = 38/73 (52%)
Frame = +1
Query: 43 IPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRD 222
+ HQ + +IK E K + + +P+E LK ED+ ++ + + +++M++
Sbjct: 366 VDHQTAEEIKEYREKK----MNSPWRDRPIEESLKLFEDMRRGLIAEGAATLRMKQDMQN 421
Query: 223 TNESTNNRVLFSV 261
N++ ++ + + +
Sbjct: 422 DNKNMSDLIAYRI 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,521
Number of Sequences: 37544
Number of extensions: 235069
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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