Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00917
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...   105   4e-23
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    55   4e-08
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006830-3|AAP13735.1|  348|Caenorhabditis elegans Serpentine re...    28   7.0  
AC006642-3|AAF39832.2|  410|Caenorhabditis elegans Acyltransfera...    28   7.0  
AC006642-2|AAF39831.1|  617|Caenorhabditis elegans Acyltransfera...    28   7.0  

>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score =  105 bits (251), Expect = 4e-23
 Identities = 49/90 (54%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
 Frame = +1

Query: 1   EVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQ 180
           E+C  +  P+   G   +VSL +K G+EAK Y+ I +A KLKP+EVEL+RLED++++I +
Sbjct: 89  EICIENHPPAGHPGEKREVSLILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITK 148

Query: 181 DFTLMRKREEEMRDTNESTNNRVLF-SVYS 267
           DF  MR+REEEMR+TNESTN+RVL+ S++S
Sbjct: 149 DFAFMRQREEEMRNTNESTNSRVLYLSIFS 178



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +3

Query: 270 MACLLGLATWQVLYLRRFFKAKKLIE 347
           M CLLGLA WQVL+LR +FK+KKLI+
Sbjct: 179 MLCLLGLAIWQVLFLRNYFKSKKLID 204


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/84 (33%), Positives = 46/84 (54%)
 Frame = +1

Query: 4   VCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQD 183
           +C  S   +   G   +V LDI+ G  A+ Y  I +  KL  +++ +++L D  + I ++
Sbjct: 98  ICIYSNSTAWFNGAQLRVHLDIQAGDHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKE 157

Query: 184 FTLMRKREEEMRDTNESTNNRVLF 255
               R REE  R T+ESTN+RV +
Sbjct: 158 QNYQRYREERFRQTSESTNSRVFY 181



 Score = 30.7 bits (66), Expect = 1.00
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 201 KRRRNERYQ*INEXXXXXXXXXXMACLLGLA---TWQVLYLRRFFKAKKLI 344
           +R R ER++  +E          +A ++ LA    WQ+ +LR FF+AKKL+
Sbjct: 161 QRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQMRHLRGFFEAKKLV 211


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 33  KKRYSTSSKLRY*NRHRSKDL*RDRGGCKIEANGSGTEETRRPIRSYRSRFHTNEEKRRR 212
           ++R S   + R  + HR +D  RDR   +    G   E  R   R +RSR  + + +R+R
Sbjct: 391 ERRSSRRKRSRSRSPHRDRD--RDRRDRETRRRGE-RESDRTSSRRHRSRSASGDRRRKR 447

Query: 213 NER 221
           ++R
Sbjct: 448 DDR 450


>Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical
           protein M106.2 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 91  TYEGIGEAAKLKPMEVELKRLEDLSEAI---VQDFTLMRKREEEM 216
           T+E   EA  L+ MEVE++  E L+E +   ++   +  KR +E+
Sbjct: 241 TFEQKKEALLLRKMEVEIRHTELLNEKLELEIRSIEVQEKRNQEL 285


>AC006830-3|AAP13735.1|  348|Caenorhabditis elegans Serpentine
           receptor, class w protein3 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 430 QKRSKKKKNRIESTQFHQDVTRVLLLNYSISFFALK 323
           +K +K++KNR +S    +D T  L++  +ISFF L+
Sbjct: 231 RKAAKRRKNRGKSACDKKDSTTKLVIFVTISFFFLE 266


>AC006642-3|AAF39832.2|  410|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform b protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 166 EAIVQDFTLMRKREEEMRDTNESTNNRVLFSVYSRWRASWVW 291
           EAI++D    R   E++   N  T   + F  +  W+ S +W
Sbjct: 2   EAIIEDEVTSRFEAEQLVSWNMLTRTSIKFYQFVNWKLSALW 43


>AC006642-2|AAF39831.1|  617|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform a protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 166 EAIVQDFTLMRKREEEMRDTNESTNNRVLFSVYSRWRASWVW 291
           EAI++D    R   E++   N  T   + F  +  W+ S +W
Sbjct: 212 EAIIEDEVTSRFEAEQLVSWNMLTRTSIKFYQFVNWKLSALW 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,536,138
Number of Sequences: 27780
Number of extensions: 222072
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)