Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00917
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.2  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 502 KSPEECSQCCEKTAHYNINYHRL*QKRSKKKKNRIE 395
           K P+  S    KT H N NY+    K+     N IE
Sbjct: 299 KEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIE 334


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 450 IL*CAVFSQHWEHSSGDLKL 509
           IL C +    W H S ++KL
Sbjct: 170 ILNCTIHIASWSHGSNEIKL 189


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 218 EIPMNQRIIEFYFQYILDGVP 280
           +I M + +I+F+  ++ +GVP
Sbjct: 485 DIKMQKVLIDFWVSFVNNGVP 505


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 218 EIPMNQRIIEFYFQYILDGVP 280
           +I M + +I+F+  ++ +GVP
Sbjct: 485 DIKMQKVLIDFWVSFVNNGVP 505


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 409 KNRIESTQFHQDVTRVLLLNYSISFFALKNLRRYRTCQVARPKR 278
           +N +    F+ D     + +Y I FFA KN + Y    +  P+R
Sbjct: 288 QNSLNGKNFNNDDD---IKSYLIQFFANKNQKFYERGIMMLPER 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,996
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)