Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00916
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    46   2e-07
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    45   7e-07
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    44   1e-06
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    31   0.012
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.25 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.44 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.5  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.5  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   5.5  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   5.5  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.6  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   RLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 185
           +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P D Q C 
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHCD 143

Query: 186 FKFGSRMHNSDEMDFVID 239
            KFGS  ++ +++D V++
Sbjct: 144 MKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 44.8 bits (101), Expect = 7e-07
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   RLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 185
           +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P D Q C 
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 143

Query: 186 FKFGSRMHNSDEMDFVID 239
            KFGS  ++ +++D V++
Sbjct: 144 MKFGSWTYDGNQLDLVLN 161


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   RLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 185
           +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C 
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCD 143

Query: 186 FKFGSRMHNSDEMDFVID 239
            KFGS  ++ +++D V++
Sbjct: 144 MKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   RLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 185
           +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C 
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCD 143

Query: 186 FKFGSRMHNSDEMDFVID 239
            KFGS  ++ +++D V++
Sbjct: 144 MKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   RLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 185
           +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C 
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCD 143

Query: 186 FKFGSRMHNSDEMDFVID 239
            KFGS  ++ +++D V++
Sbjct: 144 MKFGSWTYDGNQLDLVLN 161


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +3

Query: 6   ERLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 167
           + +W PD   +N        ATT+ ++    RV ++GS++   RL I+    M L   P 
Sbjct: 120 KNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSITRSIRLTITASCPMNLQYLPM 176

Query: 168 DMQTCTFKFGS 200
           D Q C  +  S
Sbjct: 177 DRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 69  ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 170
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 373 RGASPERHLEHCHASFHLATVLAL-HRTGQSRHIP 272
           +  +P   L HCH  FH+   +AL  + G+   +P
Sbjct: 593 KATNPGYWLFHCHIEFHVEVGMALVFKIGEDYEMP 627


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 116 LYPG-DGAVIRYTGAESVVPGGGC 48
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 272 TLLTRTTVYSFVNHEIHFVTIVHPRTELERASLHVVGPIV 153
           T+ ++ T+      +  FVT    RTEL + + HV   IV
Sbjct: 302 TIASKQTISWCYKLQEQFVTNSEVRTELFKLAQHVSANIV 341


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 351 IWNIATRASTSPRSWLCTALDRAVTSHAP 265
           +W I   A      W+C  L +A+ S  P
Sbjct: 224 LWFINCTAKGRVAVWMCNNLHKALESRNP 252


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 351 IWNIATRASTSPRSWLCTALDRAVTSHAP 265
           +W I   A      W+C  L +A+ S  P
Sbjct: 224 LWFINCTAKGRVAVWMCNNLHKALESRNP 252


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 272 TLLTRTTVYSFVNHEIHFVTIVHPRTELERASLHVVGPIV 153
           T+ ++ T+      +  FVT    RTEL + + HV   IV
Sbjct: 302 TIASKQTISWCYKLQEQFVTNSEVRTELFKLAQHVSANIV 341


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 373 RGASPERHLEHCHASFHL 320
           R  +P   L HCH  FH+
Sbjct: 660 RADNPGYWLFHCHFLFHI 677


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 260 ESGAWDVTALSSAVQSQDRGE 322
           E   W+ +A  S   +QDRGE
Sbjct: 151 EQYVWESSAGGSFTVTQDRGE 171


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 373 RGASPERHLEHCHASFHL 320
           R  +P   L HCH  FH+
Sbjct: 660 RANNPGFWLFHCHFLFHI 677


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,686
Number of Sequences: 336
Number of extensions: 2330
Number of successful extensions: 23
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)