Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00916
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    31   0.16 
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   2.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   3.4  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   7.9  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 153 DNW--PNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSCSSQER 272
           DNW  P  + T TFKF +R +N   M  V +  + + SSQ++
Sbjct: 119 DNWKCPLTINTTTFKFLTRKNNPSSMSLVSNYPLDAISSQQK 160


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 294 LDRAVTSHAPDSNNCIFFCQSRNPFRHY 211
           LD+   + +P SNN +F    +NPF  Y
Sbjct: 640 LDQIPIAMSPLSNNALFLAYDKNPFLTY 667


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 75  RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 212
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 362 SGKTSGTLPRELPPRHGPGSAPHWTEPSHPTLL 264
           S  +SG++   + PR    S   ++E SHPT +
Sbjct: 523 SSSSSGSVVSAVKPRRSAVSNDRFSEDSHPTYI 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,606
Number of Sequences: 5004
Number of extensions: 34435
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)