Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00915
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    58   3e-07
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.002
UniRef50_Q8GMG3 Cluster: Citrate/shikimate transporter; n=1; Str...    36   1.0  
UniRef50_O91565 Cluster: Pol protein; n=259; Hepatitis B virus|R...    33   7.3  
UniRef50_P03159 Cluster: P protein [Includes: DNA-directed DNA p...    33   9.6  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 57.6 bits (133), Expect = 3e-07
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = +2

Query: 644 KTKGIRSTQETSKEKQNCYFYLIPSIFIFI 733
           +TKGIR T +TSKEKQNCYFYLIP IFIFI
Sbjct: 48  QTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77



 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +3

Query: 546 LFCLVLADRADFVVVPQSISKIPKLLYKINLKQ 644
           LF ++LAD ADFVV PQSI+K PK LYKINLKQ
Sbjct: 17  LFMIILADPADFVV-PQSINKRPKHLYKINLKQ 48


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +3

Query: 12  FLLLSWVDELTAHLVLNGYW 71
           FLLL WVDELTAHLVL+GYW
Sbjct: 154 FLLLRWVDELTAHLVLSGYW 173


>UniRef50_Q8GMG3 Cluster: Citrate/shikimate transporter; n=1;
           Streptomyces globisporus|Rep: Citrate/shikimate
           transporter - Streptomyces globisporus
          Length = 441

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +2

Query: 53  GVKWLLEPTYIYNVDAPPTLTYKFSSLSIVTTAAPPFKPKRITASRQK*AGRWCLSARTH 232
           G +W    TY+  + AP      +SSL  VTT A PF    + A      G W  +A   
Sbjct: 133 GGEWTAAATYLMEI-APKNRRCLYSSLFSVTTMAGPFVASLLGAG----LGVWLGTATME 187

Query: 233 KWSYHQ*YAIYNFAG--LIFITRRYSFTVEINRE 328
            W +   + +    G  L+F+ RR + T    RE
Sbjct: 188 AWGWRVPFLLGGVFGVILLFLRRRLTETEVFRRE 221


>UniRef50_O91565 Cluster: Pol protein; n=259; Hepatitis B virus|Rep:
           Pol protein - Hepatitis B virus (HBV)
          Length = 776

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 399 SDAPVFESHWRVPIF----LMKYVLNKCSRLIS--TVKE*RRVIKIKPAK 268
           S  PVF   W+ P F    L + ++N+C + +   TV E RR+  I PA+
Sbjct: 65  STVPVFNPEWQTPSFPNIHLQEDIINRCQQFVGPLTVNEKRRLKLIMPAR 114


>UniRef50_P03159 Cluster: P protein [Includes: DNA-directed DNA
           polymerase (EC 2.7.7.7); RNA- directed DNA polymerase
           (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]; n=3252;
           Orthohepadnavirus|Rep: P protein [Includes: DNA-directed
           DNA polymerase (EC 2.7.7.7); RNA- directed DNA
           polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
           - Hepatitis B virus subtype adw2 (HBV)
          Length = 845

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 399 SDAPVFESHWRVPIF----LMKYVLNKCSRLIS--TVKE*RRVIKIKPAK 268
           S  P+F   W+ P F    L + ++N+C + +   TV E RR+  I PA+
Sbjct: 67  STVPIFNPEWQTPSFPKIHLQEDIINRCQQFVGPLTVNEKRRLKLIMPAR 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,070,329
Number of Sequences: 1657284
Number of extensions: 16827421
Number of successful extensions: 36835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36813
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)