Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00915
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.     28   7.9  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     28   7.9  

>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 653 LLFLF*VYFIQKFRYFTYRLRHYYK 579
           LL +F VYF+ KF YF   L +Y K
Sbjct: 15  LLAIFAVYFVGKFTYFEASLDYYIK 39


>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
           protein C09D8.1b protein.
          Length = 1467

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147 RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
           R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 796 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 831


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147  RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
            R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 1509 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 1544


>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
           protein C09D8.1c protein.
          Length = 1216

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147 RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
           R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 545 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 580


>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
           protein C09D8.1b protein.
          Length = 1467

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147 RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
           R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 796 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 831


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147  RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
            R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 1509 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 1544


>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147 RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
           R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 816 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 851


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 147  RLPRHSNRNALLLHGRNRQGGGAYPRELTSGPTTSN 254
            R PRH +   + L G    GGG  P E +   +TSN
Sbjct: 1529 RHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSN 1564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,487,204
Number of Sequences: 27780
Number of extensions: 412870
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)