Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00912
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 98 1e-21
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 45 1e-05
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 43 6e-05
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 6.9
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 9.2
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.2
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 98.3 bits (234), Expect = 1e-21
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 6/196 (3%)
Frame = +2
Query: 194 NPLFEKRPKNFAIGQGIQPTLTCPDL*DGPSISASSARRLYFSVV*KCPLR----STNLP 361
NPLF RP++F IGQ IQP P RR ++ K P L
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 362 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPYHPIRHKHSHQ 541
++ + +++ T +S + PY+ +++ +H
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYN-VKYGLNHV 139
Query: 542 AGREE--EGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLA 715
E + LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA
Sbjct: 140 VALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLA 199
Query: 716 LTNVESGDRASFSKVV 763
+T V D+ + +V
Sbjct: 200 VTEVREEDKNELASIV 215
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +1
Query: 256 DLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 426
DLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 45 DLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 539 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 718
+A R+ E LV++A D+ P++++ +P LC VPY K LG + K T +
Sbjct: 63 KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVM 122
Query: 719 TNVESGDRASFSKV 760
V G + SKV
Sbjct: 123 I-VPGGKKKDMSKV 135
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 569 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
+V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 51 IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 307 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 408
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 291 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 380
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 489 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 319
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 528 LCRIGWYGPLWWR 490
LCR+G YG +W R
Sbjct: 1288 LCRVGEYGEIWMR 1300
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 665 KSRL-GALVHRKTCTCLALTNVESGDRASFSKVVK 766
KSR G L +R CTC A+ + A FSK K
Sbjct: 131 KSRQSGTLNNRTLCTCTAIAGIVFTISAVFSKTPK 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,430
Number of Sequences: 5004
Number of extensions: 54715
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -