Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00912
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    89   3e-18
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    89   3e-18
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    89   4e-18
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    68   7e-12
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    38   0.006
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.032
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 37/57 (64%), Positives = 48/57 (84%)
 Frame = +1

Query: 256 DLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 426
           D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 51  DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = +2

Query: 566 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 745
           LV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V   D++
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 214

Query: 746 SFSKVVK 766
           + +K+V+
Sbjct: 215 ALNKLVE 221



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 194 NPLFEKRPKNFAIGQGIQP 250
           NPLFEKR +NF IGQ IQP
Sbjct: 30  NPLFEKRARNFNIGQDIQP 48



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 495 TKEAHTIRSGTNTVTKLVEKKKAHL 569
           TK  +T+R G NT+T+LVE ++A L
Sbjct: 131 TKRPNTVRHGVNTITRLVETRRAQL 155


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 37/57 (64%), Positives = 48/57 (84%)
 Frame = +1

Query: 256 DLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 426
           D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 51  DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = +2

Query: 566 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 745
           LV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V   D++
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 194

Query: 746 SFSKVVK 766
           + +K+V+
Sbjct: 195 ALNKLVE 201



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 194 NPLFEKRPKNFAIGQGIQP 250
           NPLFEKR +NF IGQ IQP
Sbjct: 30  NPLFEKRARNFNIGQDIQP 48



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 495 TKEAHTIRSGTNTVTKLVEKKKAHL 569
           TK  +T+R G NT+T+LVE ++A L
Sbjct: 111 TKRPNTVRHGVNTITRLVETRRAQL 135


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 37/57 (64%), Positives = 48/57 (84%)
 Frame = +1

Query: 256 DLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 426
           D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 154 DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 194 NPLFEKRPKNFAIGQGIQP 250
           NPLFEKR +NF IGQ IQP
Sbjct: 133 NPLFEKRARNFNIGQDIQP 151


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +1

Query: 256 DLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 154 DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 194 NPLFEKRPKNFAIGQGIQP 250
           NPLFEKR +NF IGQ IQP
Sbjct: 133 NPLFEKRARNFNIGQDIQP 151


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +2

Query: 566 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
           ++V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 53  IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 548 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRK 697
           R  E  + ++A +V PI++   +P +C +  +PY  +  + +LG A+ HR+
Sbjct: 81  RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR 131


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -2

Query: 468 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 349
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 341 LRSTNLPRHWTRLQLRA 391
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,677
Number of Sequences: 27780
Number of extensions: 321729
Number of successful extensions: 993
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)