Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00911
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   3.2  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    25   3.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   4.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   7.4  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   9.8  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 316 NIVSNKVTFANAFTNVEPEDDS 251
           ++  N VTFANAF N     DS
Sbjct: 345 SVFHNAVTFANAFMNFGTSSDS 366


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 234 NVLVGAESSSG-STLVNALANVTLLDTMFKL 323
           NV+V   S SG STL+N L +  L+D+  +L
Sbjct: 34  NVMVVGPSGSGKSTLINTLFSAHLMDSKGRL 64


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 109 LAMNLLHPS*ASCLRLDKASVI*SQVLRQEHGKGKQSKRQ 228
           +A+     S A+C +L    V+  ++L + HGK + +K Q
Sbjct: 616 IAVTSFLSSHAACSKLSNVRVLLLEILTRVHGKVEDAKMQ 655


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 33   VAKVPTLINSAITQARPKLNIFMK 104
            VA +PT+  S I Q   K+ +FM+
Sbjct: 1219 VAGIPTINRSVINQESGKIELFME 1242


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 328 INNLNIVSNKVTFANAFTNVEPEDDSAPT 242
           I+++N+ S+ + F+N  +N  P+D S+ T
Sbjct: 191 ISSINVPSDILDFSNLSSNEIPKDYSSST 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,288
Number of Sequences: 5004
Number of extensions: 20447
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)