Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00911
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390...    31   0.25 
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219...    30   0.78 
07_01_0221 - 1635381-1637477                                           27   5.5  
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456...    27   7.2  
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    27   7.2  
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    26   9.6  
07_03_1259 + 25255775-25255780,25255880-25255967,25256142-252567...    26   9.6  

>05_07_0294 -
           29038259-29038420,29038526-29038632,29038889-29039093,
           29039173-29039536,29039588-29039772,29039879-29040080,
           29040697-29041589
          Length = 705

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +3

Query: 126 PPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAESSSGSTLVNALANVTLL 305
           P +   L ++ + +G  + + KTG WK   ++EA   +  GA+SS    L+ AL +  LL
Sbjct: 320 PAEFQRLQEVERHLGRCMDARKTGDWK-SALREADAAIANGADSSQ---LLLALRSEALL 375


>10_06_0087 -
           10520708-10520823,10521041-10521130,10521571-10521901,
           10522248-10522409,10522506-10522726,10523852-10524056
          Length = 374

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 120 LAPPKLSELPQIRQGIGNLITSAKTGAWK-RQTVKEATLNVLVGAESS 260
           L  P+ S+ PQ  +   N I  +KTG WK   TV+  T  V+VG + S
Sbjct: 62  LIDPRNSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVS 109


>07_01_0221 - 1635381-1637477
          Length = 698

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  VAKVPTLINSAITQARPKLNIFMKYARDELAPPKL 137
           V K+  L +  ++ ARP +   MKY   ++A P+L
Sbjct: 621 VLKLGLLCSHPLSNARPNIRQVMKYLTGDMAMPEL 655


>08_01_0525 +
           4564885-4565221,4565337-4565476,4565582-4565677,
           4566079-4566146,4566542-4566643,4567492-4567630,
           4567758-4567898,4568241-4568297,4568400-4568459,
           4568866-4568973,4569834-4569994,4570453-4570531,
           4571357-4571490,4571846-4571951,4572244-4572432,
           4572595-4572822,4573028-4573183,4573491-4573532,
           4573752-4573868,4573945-4574121
          Length = 878

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 129 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEA-TLNVLVGAE 254
           PKL  LP++R  + N +      AW RQT+ EA T  V++G E
Sbjct: 89  PKL--LPRLRNVLVNAV------AWNRQTITEASTKEVILGTE 123


>03_02_0663 +
           10256898-10258915,10259162-10259248,10259463-10259724,
           10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 241 RTFSVASLTVCLFHAPVL--ALVIRLPMPC 158
           R+ SV S +VC  HAP    A V   P+PC
Sbjct: 51  RSLSVRSASVCYPHAPSTSGAFVADSPLPC 80


>08_02_0246 +
           14745367-14745372,14745452-14746106,14746299-14747269,
           14748123-14749168,14750669-14751473
          Length = 1160

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 162 GIGNLITSAKTGAWKRQTVKEATLNVLVGAESSSG 266
           G+GN+ +S   GA+K++++ E   N+    +S  G
Sbjct: 221 GLGNVSSSRSEGAYKKRSLSEFLQNIPSSKQSIIG 255


>07_03_1259 +
           25255775-25255780,25255880-25255967,25256142-25256728,
           25257172-25257362,25257531-25257594,25257949-25257984
          Length = 323

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 108 ARDELAPPKLSELPQIRQGIGNLIT---SAKTGAWKRQTVKEATLNVLVGAESSSGSTLV 278
           A +E+A   + E+ ++++ +  L+    S K+G+ +  T  E   +    + SSSGS L+
Sbjct: 79  AAEEVADFTIEEVKKLQEALNKLLRRAKSTKSGSRRGSTAAEHDADERSSSSSSSGSQLL 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,282,131
Number of Sequences: 37544
Number of extensions: 133639
Number of successful extensions: 303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)