Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00911
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    36   0.011
U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g ...    36   0.014

>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +2

Query: 254 IIFWFYIGECIGKRHLVGYDV 316
           ++FWF++GE IG+R++ GY V
Sbjct: 87  VVFWFFVGEMIGRRYIFGYIV 107



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 84  KLNIFMKYARDELAPPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAE 254
           +L I     + ELAPP+ +++P I+     L    +T  +   ++KE+ +   V  E
Sbjct: 30  RLAILKAVGKHELAPPRSADIPAIKADWAKLQKFIETKQYVNLSIKESLVYSAVALE 86


>U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g
           homolog protein 2 protein.
          Length = 131

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 254 IIFWFYIGECIGKRHLVGY 310
           ++FWF++GE IG+R++ GY
Sbjct: 87  VVFWFFVGEMIGRRYIFGY 105



 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 93  IFMKYARDELAPPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAE 254
           I     + ELAPP+ ++ P I+     + +  +TG +K  +++E  +   V  E
Sbjct: 33  ILKAVGKHELAPPRQADWPAIKADWAKVQSFIQTGGYKNLSIREGLVYTAVTLE 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,155,443
Number of Sequences: 27780
Number of extensions: 119181
Number of successful extensions: 240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)