Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00910
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    28   1.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   8.0  

>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 188 LKAIGFPD-DDAIRTEFASKSRDLDQLKALSLKWRIKYTFMMV 313
           L AI  PD    +RT FA++S++L +     LKW ++ + + V
Sbjct: 639 LLAIQLPDLVQKLRTAFANESKELTRRTGWHLKWDVRKSTVTV 681


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 391 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 480
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 558 SDRDFYVSEDKTIKVPMMYKRGDYKYGESADL 653
           +D +F+  E K+ K    +K GD KYG++A L
Sbjct: 666 NDPNFWAYERKSCK----FKNGDVKYGDTAIL 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,559
Number of Sequences: 5004
Number of extensions: 52670
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)