Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00909
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   3.4  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    26   4.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   6.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   6.0  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   6.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.9  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   7.9  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +3

Query: 228 VAGLQHYRRSFHRWPFSFE-----LLEPHAFLSPYSSTFMSSFRYIVYSVFNILYSSLL 389
           V G+  YR+ F RW   +E     L+    F++ +SS F     +++ S  N+   SLL
Sbjct: 263 VNGVLQYRKEFQRWLRLYEFRRFGLIGLSNFVNSFSSFFELISHFLIKSAQNLKGDSLL 321


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 508  NQALKLDSNVDSYNNRLAWGDSKDKTSHRVSWKFIPVWENN-KLLYK-ILNTEYTMYLK 338
            +  LKL S    Y N LA     D T+H V     P  ENN KL+   IL+ +Y   LK
Sbjct: 1646 DDGLKLLSCFHMYKNSLAKNLVSDLTAHLVKKIEEPDLENNVKLILNLILSKDYGFLLK 1704


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -1

Query: 499 LKLDSNVDSYNNRLAWGDSKDKTSHRVSWKFIPVWENNKLLYKILNTEYTMYLKLDMNVE 320
           L L  N   Y+N   W  SK+K  +      IPV  N K+ +KI   +     ++   V 
Sbjct: 789 LLLGHNSSVYSN---WPISKNKKENMEEPVTIPVQINGKVRFKIEMPKLNDENEILNFVL 845

Query: 319 EYGDRKAWGSN 287
           E  D K W SN
Sbjct: 846 ETNDGKRWLSN 856


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 121 PSTFPLFPQSRRSP*LSTCASSFRLCPYSWF 213
           P    + PQ+     L  C +S  LC YS F
Sbjct: 255 PEVLAVLPQNESMSSLEACINSLYLCDYSGF 285


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 293 TPRFPVSVLFYVHVQL----QVHSIFSIQYFIQQLVILPYRDKL 412
           T   P  V F  HV++    Q+HS   +QYF    +I    DKL
Sbjct: 139 TVDIPFQVNFPKHVEVGPGRQIHSRVKVQYFAYANIIYQSADKL 182


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 454  WGDSKDKTSHRVSWKFIPVWENNKLLYKILNTEYTMYLKLDMNVEEYG-DRKA 299
            W   + +T +R    F+      KLLY++ N +     +  M+V EY  DR A
Sbjct: 981  WASLRSQTLYRTVSGFMNYSRAIKLLYRVENPDVAQLFEGQMDVLEYELDRMA 1033


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 251 PVVLETGNVLLIENHE-YGQSLKLDAHVDSYGD 156
           P + E    + +E HE   +SLKL  HVD+  D
Sbjct: 464 PFINEVRRSITLEFHEEQNKSLKLQEHVDTVND 496


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -1

Query: 529 ENHRKILNQALKLDSNV----DSYNNRLAWGDSKDKTSHRVSWKFIPVWENNKLLYKILN 362
           E  + IL++  +L S++    D++N+  +     + ++ R    F    EN K LY+ +N
Sbjct: 261 EEFQPILDKGEELRSDLKLKDDTFNDYSSASMELNTSNLRARASFSNFMENEKKLYEKVN 320

Query: 361 TEYTMYLKLDMNVEE 317
           T  T+    ++ + E
Sbjct: 321 TNRTLLRNANLTLNE 335


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 406 IPVWENNKLLYKILNTEYTMYLKLDMNVEEYGDRKAW 296
           + VWENN+LL + L T         +N E Y +  AW
Sbjct: 93  LSVWENNRLLIEKL-TSILNIPSSQINHEFYKNSSAW 128


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 308 QESVGFQQLERERPSVEATPVVLETGNVLLIENHEYGQSLKL 183
           QE  GF+  E+      +  V+ +  ++   ENH YG ++ L
Sbjct: 392 QEKKGFEDKEQGSTPAPSPSVIEDISSIETDENHLYGAAVLL 433


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 199 PYSWFSMSKTLPVS 240
           P SW+S+SK +PVS
Sbjct: 34  PASWYSLSKKVPVS 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,761
Number of Sequences: 5004
Number of extensions: 53608
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)