Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00908
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   2.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   2.2  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.9  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.0  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   9.0  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 297 FILAITCAEWISIVAEKEEITFISQLGTPLIDTGHLCLPCSRLLKRGRSIV 145
           + L I   + + + +EKE   ++  L + + + G L + C R  KRG S++
Sbjct: 246 YTLVIASNKLLEMKSEKELFDYLRSLWSLVSNDGGLLVLCERGTKRGFSLI 296


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 297 FILAITCAEWISIVAEKEEITFISQLGTPLIDTGHLCLPCSRLLKRGRSIV 145
           + L I   + + + +EKE   ++  L + + + G L + C R  KRG S++
Sbjct: 246 YTLVIASNKLLEMKSEKELFDYLRSLWSLVSNDGGLLVLCERGTKRGFSLI 296


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 416 CVVIIFKNLLAVLQNWLVKIG*FCFC 339
           C++  F NL    + W  KI  FCFC
Sbjct: 363 CIMADFINLYHDFELWEQKINCFCFC 388


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 567 IRYILSFKLINNITF*TKLPFLTTATNVGQGSPTLGQNFCLTE 439
           IRY LSF  + N    T L  L+T T++   +    + + L+E
Sbjct: 104 IRYQLSFARLRNSDLVTALDILSTGTSLRLANAPTSKLYMLSE 146


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -3

Query: 235 FYKPARNSTH*HWTSLPSVFTATETWPKHCNK 140
           ++  A      +WT +   FT   TW ++C +
Sbjct: 72  YFNQASQQLDENWTLMKQGFTGVPTWEEYCTQ 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,974
Number of Sequences: 5004
Number of extensions: 64475
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)