Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00908
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    32   0.39 
AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine re...    31   1.2  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    29   2.7  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 360 NWLILLLCLFVGFSLDTWLFFF 295
           NWLI LL +  GFS + WLF F
Sbjct: 126 NWLIFLLAISFGFSEEIWLFKF 147


>AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein24 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 22  TYYFISVTFCVIDIFIVYFYVFATSTYNKTTFKRF*ARY-FYYNASATF 165
           T+Y I +  C++DI  + F +  T   N    ++F   Y  YY A+A++
Sbjct: 35  TFYSILLQHCIVDIIAMTFSILNTGLRNILVIRQFMFNYQDYYLAAASY 83


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +2

Query: 146 TMLRPRFSSREHGRQRCPVSMSGVPSWLIKVISSFSATIEIHSAHVIAKIKKKSQVSNEN 325
           T L P F+SR HG +R P +   VPS  +++I+  ++T    +  +     + +  ++E 
Sbjct: 227 TSLFPAFASRRHGHRRPPTTT--VPSTTLELITEPTST---ETIPITTTTAETTTTTSEE 281

Query: 326 PT 331
           PT
Sbjct: 282 PT 283


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 16  YITYYFISVTFCVIDIFIVYFYVFATSTYNKTTFKRF*ARYFYYNAS 156
           +I Y F   T  V+  F+   Y+ AT       FK+F A YF  N +
Sbjct: 20  FINYQFSFFTVPVLLAFVPILYIPATMVVAFRIFKKFLAEYFDRNVN 66


>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 358 LVNSAFVSVCWILIGYLAFLFYFSNHVCRMDLDCRRERR 242
           +V S  V+   +++G+L FL Y   H     +  RRER+
Sbjct: 2   IVASVEVTCFHVILGFLMFLLYLLLHQIYYQIKLRRERK 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,663
Number of Sequences: 27780
Number of extensions: 364369
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)