Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00908
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    24   1.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    24   1.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   7.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   7.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   7.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   7.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   7.2  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 691 TSGTANVNPSHNAAVCIQK 635
           TSG+ N N  +N A C+Q+
Sbjct: 117 TSGSDNCNKIYNLAKCVQE 135


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 691 TSGTANVNPSHNAAVCIQK 635
           TSG+ N N  +N A C+Q+
Sbjct: 117 TSGSDNCNKIYNLAKCVQE 135


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 684 AQPMSTRLTMPQCVFKSCKKCPKKQ 610
           A+    +  +P  +   CKKC  KQ
Sbjct: 59  AEGNELKRVLPDALATDCKKCTDKQ 83


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 604 RPEFLTFGKYMKYTLYFKL*TNK*YYI 524
           R E L  G Y + +L FKL  N  Y++
Sbjct: 219 RKEKLATGIYQRLSLSFKLQRNIGYFV 245


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 360 NWLILLLCLFV 328
           NWL+L++CL +
Sbjct: 3   NWLLLIVCLSI 13


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 684 AQPMSTRLTMPQCVFKSCKKCPKKQ 610
           A+    +  +P  +   CKKC  KQ
Sbjct: 59  AEGNELKRVLPDALATDCKKCTDKQ 83


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 684 AQPMSTRLTMPQCVFKSCKKCPKKQ 610
           A+    +  +P  +   CKKC  KQ
Sbjct: 59  AEGNELKRVLPDALATDCKKCTDKQ 83


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 361 KLVNSAFVSVCWILIGYLAFLFYFS 287
           K     F S  +ILI Y  FL++ S
Sbjct: 5   KYFGKNFPSTSFILINYFIFLYFNS 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,117
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)