Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00907
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.63 
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    26   4.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   5.9  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    26   5.9  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 360 SRTNCGTRATRTSSKITSRANSNSYST----KRELNSSATITIKLSNWMLTLTGQRP 518
           S  N  T AT TSS ++S A SNS ++       LNS+ + T   S+   T++   P
Sbjct: 198 SSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTP 254


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 618 HRTRDVLETGRERGQIWRQEDL 683
           H+ +D +E  R+RG  W  ED+
Sbjct: 121 HKVKDCMERPRKRGARWTGEDI 142


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 592 NNVIFKILNTEHEMYLKLDVNVDRY 666
           N+V+F+ L  E++ Y  +  N DR+
Sbjct: 207 NSVVFQYLKDENKFYFGVSANQDRF 231


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +3

Query: 432 YSTKRELNSSATITIKLSNWMLTLTGQRPPNLGRWKRLHQLPSQLATHLSLGKQQRHLQD 611
           YST  E + S  +T  LS W+  +  + P  L R  ++  +P +L+        +  + D
Sbjct: 89  YSTADEADESFEMTALLSGWL--IESKSPWILSRPNQVEAVPIKLSNKNGQSASKNKILD 146

Query: 612 TEHRTRDVLETGRERGQIWRQEDL 683
                ++ L +G +  ++  +++L
Sbjct: 147 FLKSDKENLISGDDDQELIDEDEL 170


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 435 STKRELNSSATITIKLSNWMLTLTGQRPP-NLGRWKRLHQLPSQLATHLSLGKQQRHLQD 611
           ST+   NSS TI  +LS+  L  +   P  +    +RL  +     TH S    Q+H++ 
Sbjct: 221 STQGSFNSSRTI--ELSSVTLPKSEDEPYLDYSAARRLCSINKDALTHRSHESLQQHIEL 278

Query: 612 TEHRTRDVLETGR 650
            E   +  +E  R
Sbjct: 279 LESTLQQAVEVAR 291


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 349 RHVVRVQIVARGPQGHRRRLLPERIPTHTRPKEN--*THRQPLQSSS 483
           RH + V I +R P    R+L P  + TH + K N   + ++P  SSS
Sbjct: 335 RHSIYVSIHSREPSSLSRKLAPPFLRTH-KAKSNSLFSMKRPSSSSS 380


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +1

Query: 463 QPLQSSSQTGC*R*PDKDRRTWGDGKDYTSYRVSWRLISLWENNNVIFKILNTEHEMYLK 642
           QP+ S   T      ++D R W +  +     V    +  W+   +IF+++ TE +    
Sbjct: 408 QPVLSGGSTSITDKQEEDHRLWSE--NVPKQVVDQIDVREWKRQEIIFEVIYTERDFVRD 465

Query: 643 LD 648
           L+
Sbjct: 466 LE 467


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 65  YSENSDDIQNLERELVKRAYTMEPGTNCPQT*RP 166
           +++  +DIQ+ E +L+   YT+ P T      RP
Sbjct: 424 FNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRP 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,219
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)