Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00907
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0119 + 12782712-12783218 31 1.1
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 30 2.0
03_06_0754 - 36025579-36027000 29 3.5
07_03_0505 + 18858406-18858522,18859860-18859955,18860760-18861047 29 4.6
07_01_0777 + 6004370-6004559,6005089-6005207,6005411-6005538,600... 29 4.6
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 29 4.6
11_06_0577 - 25158833-25162864 28 6.0
01_01_0888 + 6990354-6991862,6991970-6992431 28 6.0
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 28 8.0
>08_02_0119 + 12782712-12783218
Length = 168
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 482 LKLDANVDRTKTAEPGEMEKTTPATESAGDSS 577
+KLDA+V T +++ GE+++ + T +GD S
Sbjct: 14 MKLDADVAATSSSKDGEVQQVSDGTAQSGDKS 45
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Frame = +3
Query: 378 TRATRTSSKITSRANSNSYSTKRELNSSA----TITIKLSNWMLTLTGQRPPNLGRWKRL 545
+RA T +++S ++ S + L + A T+ LS M L +R W R+
Sbjct: 523 SRAAPTPRRLSSLPSAAPLSAEPLLQALAAANTTVLDGLSAQMEVLQAERAEVDAAWARV 582
Query: 546 HQLPSQLATHLSLGKQ--QRHLQDTEHRTRDVLETGRE 653
+ + + G++ +RH + E R RD+ E RE
Sbjct: 583 EEGRRSVEAMVEAGRKAHRRHASELEARRRDLAEIARE 620
>03_06_0754 - 36025579-36027000
Length = 473
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 504 TGQRPPN-LGRWK----RLHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRER 656
TG+ P + WK R H++ Q+A +L L D EH R +L+T R
Sbjct: 128 TGRDPHRWVSTWKDMDTRAHKMDKQVAATSALRTAMEDLADAEHGLRKLLQTSSSR 183
>07_03_0505 + 18858406-18858522,18859860-18859955,18860760-18861047
Length = 166
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -2
Query: 166 GSSSLRAVRTRLHSISPFY--QLTLEILNVIRIFRISVGNDESFGGVDNPGD 17
GS +++ R HSI+P + +LTL I N++ +I V + ++F D+ GD
Sbjct: 37 GSQKVKS-SIRYHSINPEWNEELTLSITNMMLPVKIEVFDKDTFTKDDSMGD 87
>07_01_0777 +
6004370-6004559,6005089-6005207,6005411-6005538,
6005645-6005749,6007156-6008650
Length = 678
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -2
Query: 508 PVNVSIQFESLIVMVADE----FNSLLVEYELEFAREVIFDDVLVALVPQFVRERHGVLD 341
P+N + F S + V F++L + L A +I +L FVRE H +LD
Sbjct: 376 PINRLLTFASTVSKVNGSPEKLFHTLQMHKALSEASPMIQQALLGEQKEFFVRELHRILD 435
Query: 340 ALRDEPRD 317
L D R+
Sbjct: 436 TLEDSARE 443
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 603 LQDTEHRTRDVLETGRERGQIWRQEDL 683
L+D++ R RD+ E R QIW Q+++
Sbjct: 539 LEDSKTRVRDLEELLESRSQIWEQKEI 565
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 516 PPNLGRWKRLHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRERGQI 665
PP G W L +P+ L+T + + + + + + R RDV E + G +
Sbjct: 86 PPEPGFWPWLRHVPTWLSTVPTRHRLAKKIHELKDRVRDVGERRQRYGVV 135
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 549 QLPSQLATHLSLGKQQRHLQDTEHRTRD 632
+L Q+ THL G+QQ+ Q E R +D
Sbjct: 131 KLEKQITTHLRGGRQQQQQQQPEQRRQD 158
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 398 VEDYFPSEFQLILDQKRIKLIGNHYNQALKLDANVDRTKTAEPGEMEKTTPATESAGD 571
+EDYFP+E+ L +++IKL+ NQ + + P E + D
Sbjct: 177 IEDYFPAEYD--LRREKIKLLKGECNQGSSSGTSCIKEGRGRPTNKENRAHQDDDLSD 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,554,043
Number of Sequences: 37544
Number of extensions: 390484
Number of successful extensions: 1411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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