Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00906
(684 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 152 7e-36
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 147 2e-34
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 139 5e-32
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 138 9e-32
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 127 2e-28
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 118 2e-25
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 115 9e-25
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 113 4e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 106 6e-22
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 98 2e-19
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 91 2e-17
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 81 2e-14
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 67 3e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 67 4e-10
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 66 1e-09
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 65 1e-09
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 63 7e-09
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 63 7e-09
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 62 1e-08
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 59 1e-07
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 58 2e-07
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 58 3e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 55 1e-06
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 55 1e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 4e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 53 6e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 53 6e-06
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 50 4e-05
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 48 2e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 48 3e-04
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 47 4e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 43 0.006
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.075
UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1; ... 39 0.099
UniRef50_UPI0000DB7528 Cluster: PREDICTED: similar to Homeobox p... 39 0.13
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 39 0.13
UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransfera... 38 0.17
UniRef50_Q73XW5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.30
UniRef50_A6PQ76 Cluster: Putative uncharacterized protein; n=1; ... 38 0.30
UniRef50_Q9VVJ8 Cluster: CG6064-PA; n=1; Drosophila melanogaster... 37 0.40
UniRef50_Q4TFG9 Cluster: Chromosome undetermined SCAF4487, whole... 37 0.53
UniRef50_Q4QD98 Cluster: Putative uncharacterized protein; n=3; ... 37 0.53
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 37 0.53
UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
UniRef50_Q73TJ6 Cluster: Putative uncharacterized protein; n=1; ... 36 0.92
UniRef50_Q7QSG2 Cluster: GLP_64_29090_28800; n=1; Giardia lambli... 36 0.92
UniRef50_A7DDI7 Cluster: Putative uncharacterized protein; n=2; ... 36 1.2
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 35 2.1
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 35 2.1
UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q0UL67 Cluster: Predicted protein; n=1; Phaeosphaeria n... 34 2.8
UniRef50_Q2CHG7 Cluster: Parallel beta-helix repeat protein; n=4... 34 3.7
UniRef50_A1FX86 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens "Keratin... 33 4.9
UniRef50_Q4S3D3 Cluster: Chromosome 1 SCAF14751, whole genome sh... 33 4.9
UniRef50_Q3JTY8 Cluster: Putative uncharacterized protein; n=4; ... 33 4.9
UniRef50_Q1D0U8 Cluster: Putative uncharacterized protein; n=1; ... 33 4.9
UniRef50_A6NIY6 Cluster: Uncharacterized protein MAN1B1; n=2; Ho... 33 4.9
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 6.5
UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN full-... 33 6.5
UniRef50_UPI00005A5D2B Cluster: PREDICTED: similar to Protein CX... 33 8.6
UniRef50_Q8CVF4 Cluster: Penicillin G acylase; n=4; Leptospira|R... 33 8.6
UniRef50_Q1YI78 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_A5P378 Cluster: Putative uncharacterized protein; n=3; ... 33 8.6
UniRef50_A0VKY2 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_Q8MS04 Cluster: RH49436p; n=9; Endopterygota|Rep: RH494... 33 8.6
UniRef50_A5K9H1 Cluster: RNA-binding protein, putative; n=1; Pla... 33 8.6
UniRef50_A6R803 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 152 bits (369), Expect = 7e-36
Identities = 67/81 (82%), Positives = 75/81 (92%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGR 191
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VGT+V+RERHPGSFDIVHIKD
Sbjct: 192 VGTVVNRERHPGSFDIVHIKD 212
Score = 148 bits (359), Expect = 1e-34
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
IFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDV
Sbjct: 46 IFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDV 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKR 249
KGRF IHRI+ EEAKYKLCKVK+
Sbjct: 106 KGRFVIHRISAEEAKYKLCKVKK 128
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
GH FATRL NVFIIGKG K YISLP+GKG++L+IAEERDKR+AAK
Sbjct: 215 GHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 147 bits (357), Expect = 2e-34
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
IFLRNRLKYALTG+EV KI QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD
Sbjct: 46 IFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDT 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
KGRF +HRITPEEAKYKLCKV+++
Sbjct: 106 KGRFAVHRITPEEAKYKLCKVRKI 129
Score = 144 bits (349), Expect = 2e-33
Identities = 60/81 (74%), Positives = 72/81 (88%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR
Sbjct: 132 GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGR 191
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
+G I +RERHPGSFD+VH+KD
Sbjct: 192 IGVITNRERHPGSFDVVHVKD 212
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/46 (78%), Positives = 44/46 (95%)
Frame = +2
Query: 503 HGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
+G++FATRL+N+F+IGKG K +ISLPRGKGIRLTIAEERDKR+AAK
Sbjct: 214 NGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAK 259
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 139 bits (337), Expect = 5e-32
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D+ T KI DF KF++GNLCM+TGG NLGR
Sbjct: 104 GTKGIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGR 163
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
+G I +RE HPGSFD+VH+KD
Sbjct: 164 IGVITNRENHPGSFDVVHVKD 184
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = +2
Query: 503 HGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDK 625
+G++FATRL+N+F+IGKG +ISLP GKGIR TIAEE+ +
Sbjct: 186 NGNSFATRLSNIFVIGKGNIPWISLPHGKGIRFTIAEEKKR 226
Score = 48.4 bits (110), Expect(2) = 9e-13
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGK 90
IFLRNRLKYALTG+EV KI Q IK+DGK
Sbjct: 46 IFLRNRLKYALTGDEVKKIRMQHFIKMDGK 75
Score = 47.6 bits (108), Expect(2) = 9e-13
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +1
Query: 175 DVKGRFTIHRITPEEAKYKLCKVKRV 252
D KGRF +HRITPEEAKYKL KV+++
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKI 101
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 138 bits (335), Expect = 9e-32
Identities = 56/81 (69%), Positives = 71/81 (87%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N+CM+TGG NLGR
Sbjct: 164 GTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGR 223
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
+G I +RERHPGSFD+VH+KD
Sbjct: 224 IGVITNRERHPGSFDVVHVKD 244
Score = 130 bits (313), Expect(2) = 2e-29
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
IFLRNRLKYALTG+EV KI QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDV
Sbjct: 46 IFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDV 105
Query: 181 KGRFTIHRITPEEAK 225
KGRFT+HRIT EEAK
Sbjct: 106 KGRFTVHRITAEEAK 120
Score = 80.6 bits (190), Expect = 3e-14
Identities = 35/45 (77%), Positives = 43/45 (95%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
G++FATRL+N+F+IGKG K ++SLPRGKGIRLTIAEERDKR+AAK
Sbjct: 247 GNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERDKRLAAK 291
Score = 22.2 bits (45), Expect(2) = 2e-29
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1
Query: 223 KYKLCKVKRV 252
+YKLCKVK++
Sbjct: 152 QYKLCKVKKI 161
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 127 bits (307), Expect = 2e-28
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +RNRLKYALT EV+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD
Sbjct: 46 LIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDT 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
KGRF +H I EEAK+KLCKV+ +
Sbjct: 106 KGRFRLHSIKDEEAKFKLCKVRSI 129
Score = 122 bits (293), Expect = 1e-26
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN GR
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGR 191
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VG I +RE+H GSF+ +HI+D
Sbjct: 192 VGVIKNREKHKGSFETIHIQD 212
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
GH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE KR+A++
Sbjct: 215 GHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 118 bits (283), Expect = 2e-25
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +3
Query: 252 GTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 431
GTG +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +
Sbjct: 132 GTGA--IPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGM 189
Query: 432 GRVGTIVSRERHPGSFDIVHIKD 500
GRVG IV RE HPGSF+IVHIKD
Sbjct: 190 GRVGVIVKREVHPGSFEIVHIKD 212
Score = 109 bits (263), Expect = 5e-23
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LRNRL YAL G EV IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+
Sbjct: 46 LILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNT 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKR 249
K RF + +T E+AK+KLCK+++
Sbjct: 106 KRRFCLVPLTAEQAKFKLCKIEK 128
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRI 631
G+TF TRLNNVF+IGKGT+ ++LP KGI+ + ++ ++ I
Sbjct: 215 GNTFTTRLNNVFVIGKGTETLVNLPLDKGIKKPLLQQVNETI 256
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 115 bits (277), Expect = 9e-25
Identities = 54/84 (64%), Positives = 64/84 (76%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
IFLRNRLKYALTG+EV KI Q IKVDGK+RTD P MDV+SI+K E F LIY +
Sbjct: 56 IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGI 115
Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
RF +HRITPEE KYKLCK++++
Sbjct: 116 NRRFALHRITPEEVKYKLCKMRKI 139
Score = 108 bits (260), Expect = 1e-22
Identities = 47/79 (59%), Positives = 62/79 (78%)
Frame = +3
Query: 264 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 443
K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG N GR+G
Sbjct: 144 KGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKITA-LKFDTGNLCLVTGGGNWGRIG 202
Query: 444 TIVSRERHPGSFDIVHIKD 500
I +RERHP SFD H+KD
Sbjct: 203 VITNRERHPVSFDTFHVKD 221
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 113 bits (272), Expect = 4e-24
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
IFLR+RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD
Sbjct: 60 IFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDC 119
Query: 181 KGRFTIHRITPEEAKYKLCKVKR 249
KGRF +H I +EA +KL +V +
Sbjct: 120 KGRFCVHHIEAKEASFKLLRVNQ 142
Score = 96.7 bits (230), Expect = 5e-19
Identities = 41/81 (50%), Positives = 60/81 (74%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GR
Sbjct: 146 GAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGR 205
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VGTI E+ SFDIVH+KD
Sbjct: 206 VGTIQKIEKQMASFDIVHLKD 226
Score = 39.1 bits (87), Expect = 0.099
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAE 613
G FATR+ NVF+IG+ ISLP +G+R +I E
Sbjct: 229 GAVFATRIMNVFVIGENEHPLISLPAREGVRPSILE 264
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 106 bits (254), Expect = 6e-22
Identities = 44/81 (54%), Positives = 58/81 (71%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
GP +PY+VTHD RTIR+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GR
Sbjct: 244 GPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGR 303
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VG I E+H GSFDI H+KD
Sbjct: 304 VGIIQHIEKHQGSFDICHVKD 324
Score = 95.1 bits (226), Expect = 1e-18
Identities = 47/91 (51%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 174
+ L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV IEKT++ FR++Y
Sbjct: 156 VLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSFRILY 215
Query: 175 DVKGRFTIHRITPEEAKYKLCKV--KRVAPD 261
D KGRF + ++ EEAKYKL KV K + P+
Sbjct: 216 DTKGRFVLKSLSKEEAKYKLLKVTAKAIGPN 246
Score = 56.4 bits (130), Expect = 6e-07
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +2
Query: 485 CAHQGLHGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIA 634
C + G+ FATRL N+F++G+G K++I LP G G+R TI EER ++ +
Sbjct: 320 CHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRKFS 369
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 97.9 bits (233), Expect = 2e-19
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+GR
Sbjct: 132 GSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGR 191
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
+G ++ GS IV +KD
Sbjct: 192 IGVFINTIGGQGSDSIVCLKD 212
Score = 96.3 bits (229), Expect = 6e-19
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I +RN+LKY+ E L I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD
Sbjct: 46 IVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDN 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKRVA 255
G F +HRIT +E+ +KLCKV RV+
Sbjct: 106 VGHFFLHRITIKESMFKLCKVIRVS 130
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/41 (53%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Frame = +2
Query: 503 HGHTFATRLNNVFIIGKGTKAYISLPRGKGIR-LTIAEERD 622
+G +F+T+ N+F+IGKGTK++ISLPR +G+R LT + E D
Sbjct: 214 NGSSFSTQTKNLFVIGKGTKSFISLPRFRGLRTLTKSLEHD 254
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 91.1 bits (216), Expect = 2e-17
Identities = 44/81 (54%), Positives = 55/81 (67%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +RNRLKYAL E I++Q L+ VD R D YPAGFMDVV I KT + FRL+YDV
Sbjct: 43 VIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDV 102
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
KGRF + ++ EA+ KL KV
Sbjct: 103 KGRFALVNLSEAEAQIKLMKV 123
Score = 87.8 bits (208), Expect = 2e-16
Identities = 39/82 (47%), Positives = 50/82 (60%)
Frame = +3
Query: 255 TGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 434
T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG N G
Sbjct: 128 TATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRG 187
Query: 435 RVGTIVSRERHPGSFDIVHIKD 500
R+G IV E HPG+F+I H+KD
Sbjct: 188 RIGEIVKVECHPGAFNIAHLKD 209
Score = 41.9 bits (94), Expect = 0.014
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKG-TKAYISLPRGKGIRLTIAEERDKRIAA 637
G FATR N+F+IGK +++P+ +G+R+ + +ER++R+ A
Sbjct: 212 GAEFATRAANIFVIGKDLNNLQVTVPKQQGLRMNVIQEREERLIA 256
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 81.0 bits (191), Expect = 2e-14
Identities = 38/77 (49%), Positives = 55/77 (71%)
Frame = +1
Query: 19 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 198
L+YA E+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +
Sbjct: 52 LRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHL 111
Query: 199 HRITPEEAKYKLCKVKR 249
HRI+ EEA Y+L KV +
Sbjct: 112 HRISSEEASYRLTKVTK 128
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +3
Query: 264 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 443
+ +PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+ GRVG
Sbjct: 133 QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVG 192
Query: 444 TI 449
I
Sbjct: 193 VI 194
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 67.3 bits (157), Expect = 3e-10
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I +R+ L YA E KI+ + I VDG VR +P +P G MDVV I +T + +R++ +
Sbjct: 50 ILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNE 109
Query: 181 KGRFTIHRITPEEAKYKLCKVK 246
R + I+ EEA+ K+C++K
Sbjct: 110 HHRLDVVPISEEEARVKVCRIK 131
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 66.9 bits (156), Expect = 4e-10
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +R+ LK A E +I+ + VDG+V D +P GFMD++ I KT E++R++ D
Sbjct: 47 LVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDK 106
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
KGR +++I EE KLCK+
Sbjct: 107 KGRLQLNKI--EENDSKLCKI 125
Score = 37.5 bits (83), Expect = 0.30
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 288 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 449
HDG+ + + V D I L + +I + + + G +ITGG++ G +GT+
Sbjct: 141 HDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +R+ LKYA T +E I+ + +KVDG VR D +P G MDV+ I T E++R++ D
Sbjct: 42 LIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDA 101
Query: 181 KGRFTIHRITPEEAKYKLCKVK 246
+ + I+ EEA KL +V+
Sbjct: 102 DKYYNLLPISTEEAALKLLRVE 123
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 65.3 bits (152), Expect = 1e-09
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I LR+ YA T E +I+ R+I+VDG+V TD +P G MDV+ I + +R++ D
Sbjct: 49 IVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDP 108
Query: 181 KGRFTIHRITPEEAKYKLCKVKR 249
+ I PEEA YKL +++R
Sbjct: 109 ARKLRFVEIKPEEAGYKLAQIRR 131
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 62.9 bits (146), Expect = 7e-09
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LR+ YA T E I+ + +KVDGKVR D YP G MDV+ + NE +R+I D
Sbjct: 41 VLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDP 100
Query: 181 KGRFTIHRITPEEAKYKLCKVK 246
RI EA K+C+++
Sbjct: 101 VNFLRPIRIDKSEAGVKVCRIE 122
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 62.9 bits (146), Expect = 7e-09
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YD 177
+ +RN L YA T E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y
Sbjct: 47 LIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYP 106
Query: 178 VKGRFTIHRITPEEAKYKLCKVK 246
VK F +H I EE K +++
Sbjct: 107 VK-FFKLHPIPEEEGDLKPVRIE 128
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Frame = +3
Query: 288 HDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 443
HDGR I R DP + + D++ + + +I IKF G + +I GGRN+GRVG
Sbjct: 143 HDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVG 202
Query: 444 TIVSRER 464
+ S ++
Sbjct: 203 VVKSVQK 209
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 62.1 bits (144), Expect = 1e-08
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+SI+ + ++YD
Sbjct: 43 IALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDR 102
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
KG+ I + P KL KV
Sbjct: 103 KGKLVIRQNAPGNKGLKLFKV 123
Score = 38.7 bits (86), Expect = 0.13
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +3
Query: 228 QVV*SQACGTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLC 407
+VV GTG + + HDG+TI I +D + + I +I + +K G+
Sbjct: 122 KVVKKTIIGTGKIQLGF---HDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKV 178
Query: 408 MITGGRNLGRVGTIVSRE 461
ITGG ++G + TI S E
Sbjct: 179 FITGGSHVGELATIKSIE 196
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
++LR + A +EV KI+ QR + V+G+ D G D+VSI K + +R+ DV
Sbjct: 41 VWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDV 100
Query: 181 KGRFTIHRITPEEAKYKLCKVK 246
KG I E AK +LCK++
Sbjct: 101 KGNLVAIEIPAESAKTRLCKIR 122
Score = 35.5 bits (78), Expect = 1.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 315 DPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIV 452
D K DS+ + + T +I+D + GN+ MI GG++ G+VG IV
Sbjct: 145 DNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIV 195
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LR+ LK A +E+ KI+ + + VDGKVR D Y G D +SI N +R++ +
Sbjct: 43 VVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGM 102
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
G+F H + +A K+CK+
Sbjct: 103 DGKF--HLVPVTDASAKICKI 121
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 288 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 449
HDG T+ + K DS+ L + KI + G+L M+T G++ G +G +
Sbjct: 137 HDGTTMIASNDY-KTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 57.6 bits (133), Expect = 3e-07
Identities = 28/81 (34%), Positives = 49/81 (60%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +R+ LKYA E KI++ I +DG R + +PAG MDV+SI + +E + +++D
Sbjct: 47 LVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDE 106
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
GR ++ + ++ KLCK+
Sbjct: 107 SGRISLKK--TDKTDVKLCKI 125
Score = 37.1 bits (82), Expect = 0.40
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 315 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 494
+ + K DS+ + I I + F G L ITGG+++G IV E DIV +
Sbjct: 158 EDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTL 217
Query: 495 KD 500
++
Sbjct: 218 EN 219
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +1
Query: 7 LRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 186
+R+ LK + E +I+ L+KVDGK + + GFMDV+ I E +R++Y+ +G
Sbjct: 44 IRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQG 101
Query: 187 RFTIHRITPEEAKYKLCKV--KRVAPDLRM 270
+ + T E A KL KV K +AP R+
Sbjct: 102 ALVLMKETKERASMKLLKVRSKVIAPGNRI 131
Score = 51.2 bits (117), Expect = 2e-05
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 261 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 440
P N L THDGRT D KV D + + KI + IK + GN IT G ++ +
Sbjct: 127 PGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQT 186
Query: 441 GTIVSRERHPG-SFDIVHIKD 500
GTI E G S ++VH ++
Sbjct: 187 GTISKIEAKEGSSANLVHFQE 207
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/81 (39%), Positives = 42/81 (51%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I L+ LK T E +I+ + VDGKVR D YP G MDVV I + R+I D
Sbjct: 41 ILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDN 100
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
T I+ E+AKYK ++
Sbjct: 101 VRYLTTINISREDAKYKFVRI 121
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 4e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I+LR+ +++AL EV KI+ R + ++G + TD D++S K ++ + ++ D
Sbjct: 40 IWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDE 99
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
KGR + I+ + AK +L KV
Sbjct: 100 KGRHNEYEISADAAKLQLVKV 120
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 53.2 bits (122), Expect = 6e-06
Identities = 27/83 (32%), Positives = 46/83 (55%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
++LR+ L A EV ++ + VDG+ D +P G DV++I + NE +R++ D
Sbjct: 47 VWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDE 106
Query: 181 KGRFTIHRITPEEAKYKLCKVKR 249
+G+ + +I EEA K K+ R
Sbjct: 107 RGKLYLKKIDKEEANIKYGKIIR 129
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 53.2 bits (122), Expect = 6e-06
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +R+ LK E +I+ + + VDG R D +P G DV+++ NE +R++ D
Sbjct: 41 LIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDE 100
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
KGR ++++ E KLC++
Sbjct: 101 KGRLVLYKLN-ETNVNKLCRI 120
Score = 37.1 bits (82), Expect = 0.40
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 336 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 452
DS+ L I ++ +KFE GNL M+ GG++ G G I+
Sbjct: 151 DSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIM 189
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = -2
Query: 503 GVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCDV*LDGIVDFD 324
GVL VHN EG + LA D V + DH Q ++LD + +L DV +G+ D
Sbjct: 68 GVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLD 127
Query: 323 KWVWVADGAAIMRYQVRNIL 264
+ V +GAA+++ R+ L
Sbjct: 128 HGIRVTNGAAVVQTDARHAL 147
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LR+ L A E +++ R + VDG++ TD G MDV+++ + + FR I DV
Sbjct: 43 VILRDVLDLAHNLREAKRMLATRQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDV 100
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
G+ I+ + A KLC+V
Sbjct: 101 NGKLRYRSISDKAAASKLCRV 121
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 288 HDGRTIRYPDP-LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 461
HDGR I D L D++ + + + F G +TGG ++G +VSR+
Sbjct: 137 HDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGITAKVVSRD 195
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 43 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEA 222
E K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 60 EAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEK 119
Query: 223 KYKLCKVKRV 252
K+CKV ++
Sbjct: 120 DLKICKVIKI 129
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +3
Query: 279 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSR 458
++T D R ++ IKV DS+ + +I+ +KFE G+LC+IT G++LG + I
Sbjct: 139 IITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEI 198
Query: 459 ERHPGSFDIVHIK 497
+ ++H++
Sbjct: 199 RKTKSLRKMIHLE 211
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 47.6 bits (108), Expect = 3e-04
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 288 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-R 464
HDG T+ IK DS+ + I +I+D +KF GN ITGG ++G + TI S E +
Sbjct: 136 HDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIK 195
Query: 465 HPGSFDIVHIKD 500
++VH+ +
Sbjct: 196 SSSGENMVHMNE 207
Score = 41.9 bits (94), Expect = 0.014
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I LR+ LK E+ +I+ L+ VDGKV + GFMD +++ + L + YD
Sbjct: 42 IALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDR 99
Query: 181 KGRFTIHRITPEEAKYKLCKVK 246
KG+ I E KL +VK
Sbjct: 100 KGKLVILPKPGETKGLKLLRVK 121
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LR+ L E +++ + + VDG R D +P G MD+++I N +R++ D
Sbjct: 42 VILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDG 101
Query: 181 KGRFTIHRITPEEAKYKLCKVK 246
K R ++++ A KLC+++
Sbjct: 102 KSRLVLNKLDGTGAD-KLCRIE 122
Score = 41.9 bits (94), Expect = 0.014
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 336 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 449
DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 152 DSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
I LR+ L YA E + + + ++GK +D P G D+++ + E +R+
Sbjct: 41 IVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGE 100
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
GR + I P+ A+ KL K+
Sbjct: 101 GGRLALTAIDPDAAQSKLGKI 121
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 39.5 bits (88), Expect = 0.075
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 43 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 186
E L I KQ+ +KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 126 EELDINKQQKVKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
>UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 546
Score = 39.1 bits (87), Expect = 0.099
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 523 EVEQRVHNRQ---GHEGVHLAAARQGHPPHHRRGA 618
E Q+VH R+ G E +HL + HPPHHR+GA
Sbjct: 441 EYVQKVHEREMKSGEEAIHLPNSGTHHPPHHRKGA 475
>UniRef50_UPI0000DB7528 Cluster: PREDICTED: similar to Homeobox
protein araucan; n=1; Apis mellifera|Rep: PREDICTED:
similar to Homeobox protein araucan - Apis mellifera
Length = 677
Score = 38.7 bits (86), Expect = 0.13
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Frame = +1
Query: 433 GVWAPSCPARDIPAPST-----------LCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAA 579
G+ C A +P P+T C + P H H+ +H+ Q H G
Sbjct: 393 GIVKTDCSAAGVPIPATKPKIWSLADTAACKTPPPPTHPHHQQYHHLHHHQQHYGQQQQQ 452
Query: 580 ARQGHPPHHRRGAGQAHRSQ 639
+Q H HH G H SQ
Sbjct: 453 QQQQHQHHHMPSQGHHHHSQ 472
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 38.7 bits (86), Expect = 0.13
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LR+ L T E K + ++VDG RT + G MDVV + T +++R++
Sbjct: 47 VLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSG 106
Query: 181 KGRFTIHRITPEEAKYKLCKV 243
+I E K+C+V
Sbjct: 107 GAILKPVKIEAAEKDRKICRV 127
>UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransferase;
n=4; Rhodospirillaceae|Rep: Predicted SAM-dependent
methyltransferase - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 820
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +1
Query: 547 RQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 654
RQGH+ V AA R GHP HHR G Q R G+ V
Sbjct: 43 RQGHQAVDHAAPR-GHPQHHREGHAQGLRPIGQSGV 77
>UniRef50_Q73XW5 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium avium subsp. paratuberculosis|Rep:
Putative uncharacterized protein - Mycobacterium
paratuberculosis
Length = 378
Score = 37.5 bits (83), Expect = 0.30
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 439 WAPSCPARDIPAPSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAA-ARQGHPPHHRRG 615
W R++ AP+ C SR R HL H Q H G+ A + H R+
Sbjct: 6 WWLFLSGRELVAPARCCRSRATRQHLSHRDRQ-----YRHPGIEFAGDDGRRHRGQRRQD 60
Query: 616 AGQAHRSQGRRAVG 657
AGQA RS+ RR +G
Sbjct: 61 AGQA-RSRRRRGLG 73
>UniRef50_A6PQ76 Cluster: Putative uncharacterized protein; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Putative
uncharacterized protein - Victivallis vadensis ATCC
BAA-548
Length = 762
Score = 37.5 bits (83), Expect = 0.30
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 493 SRTPRAHLRHEV---EQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVGLR 663
++ PR H RH+ EQR R+G L GHP H + Q HR +G+RA G R
Sbjct: 128 AQQPRRHHRHQRDRGEQRAAQRKGDHRRKLLEHHAGHPLHEEQ--RQEHRQRGQRAGGQR 185
>UniRef50_Q9VVJ8 Cluster: CG6064-PA; n=1; Drosophila
melanogaster|Rep: CG6064-PA - Drosophila melanogaster
(Fruit fly)
Length = 797
Score = 37.1 bits (82), Expect = 0.40
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 451 CPARDIPAPSTLCTSRTPRA-HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 606
CP+ +P P + +P+ H H+ +Q+ H++Q H + H PHH
Sbjct: 625 CPSSPLPIPIPMSAQSSPQQQHHHHQQQQQQHHQQQHHQQQQLSLSLHHSPHH 677
>UniRef50_Q4TFG9 Cluster: Chromosome undetermined SCAF4487, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4487,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 258
Score = 36.7 bits (81), Expect = 0.53
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 502 PRAHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQGRRAVG 657
PR HL E R G G A RQ PPH RR AG+ RSQG R +G
Sbjct: 160 PRLHLE-PAESEAAARTGRGGDRRARGRQRAQLPPHTRRPAGRYRRSQGWRHLG 212
>UniRef50_Q4QD98 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 928
Score = 36.7 bits (81), Expect = 0.53
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Frame = +1
Query: 505 RAHLRHEVEQRVHNRQGHEGVH--LAAARQGHPPHHRRGA-------GQAHRSQGRRAVG 657
R L H V +H+R G G H + AR PP HR+G G++ R Q RRA+
Sbjct: 409 REALLHRVLLELHDRNGSGGAHRQSSPARGETPPRHRQGTDAAVAAPGESERQQSRRAMR 468
Query: 658 LRT 666
L T
Sbjct: 469 LLT 471
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 36.7 bits (81), Expect = 0.53
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 106 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAPDLRMFRTW 282
+YPA + D I + E+FRL+ + + RI + K C ++RV F+ W
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTERFQKW 154
>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 189
Score = 36.3 bits (80), Expect = 0.70
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -2
Query: 650 ARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRC 531
AR P RC P R CP R ARC CP R RC
Sbjct: 9 ARCP-ARCPARCPARCPARCPARCPARCPARCPARCPARC 47
Score = 36.3 bits (80), Expect = 0.70
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -2
Query: 650 ARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRC 531
AR P RC P R CP R ARC CP R RC
Sbjct: 13 ARCP-ARCPARCPARCPARCPARCPARCPARCPARCPARC 51
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -2
Query: 650 ARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRC 531
AR P RC P R CP R ARC CP R C
Sbjct: 17 ARCP-ARCPARCPARCPARCPARCPARCPARCPARCPAHC 55
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRC 531
C P R CP R ARC CP R RC
Sbjct: 7 CFARCPARCPARCPARCPARCPARCPARCPARC 39
>UniRef50_Q73TJ6 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium avium subsp. paratuberculosis|Rep:
Putative uncharacterized protein - Mycobacterium
paratuberculosis
Length = 381
Score = 35.9 bits (79), Expect = 0.92
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 436 VWAPSCPARDIPAPSTLCTSR--TPRAHLRHEVEQRVHNRQGHEGV---HLAAARQGHPP 600
V P PA P L R RA + QR H R+ H GV H AR P
Sbjct: 178 VGGPPRPAGGAGGPRRLGQHRHARQRARPKRHARQRGHERRRHAGVRGDHHGPARD--PR 235
Query: 601 HHRRGAGQAHRSQGRRAVG 657
H+ GAG R + RRAVG
Sbjct: 236 RHQAGAGSPSR-RARRAVG 253
>UniRef50_Q7QSG2 Cluster: GLP_64_29090_28800; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_29090_28800 - Giardia lamblia
ATCC 50803
Length = 96
Score = 35.9 bits (79), Expect = 0.92
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 469 PAPSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAA---ARQGHPPHHRRGAGQAHRSQ 639
P P LC R P HL E++ R Q +G L A QG PH R GQ R +
Sbjct: 28 PPPRRLCLRRRPGRHL--ELQGRAREGQADDGQVLRALVRPLQGPRPHLRGAWGQCPRGR 85
Query: 640 GRR 648
G R
Sbjct: 86 GHR 88
>UniRef50_A7DDI7 Cluster: Putative uncharacterized protein; n=2;
Methylobacterium extorquens PA1|Rep: Putative
uncharacterized protein - Methylobacterium extorquens
PA1
Length = 711
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 523 EVEQRVHNRQGHEGVHLAAARQGH--PPHH-RRGAGQAHRSQGRRAVG 657
E EQR + +GH+ R+ H P HH G G+ HR++ R AVG
Sbjct: 236 EQEQRFEHDEGHDDRRRDQRREAHDLPQHHVGHGGGEQHRARHRDAVG 283
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 159 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTI 13
Q I+ N +NI + I + N P E LFH F DFVSG ++ I
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGI 98
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 505 RAHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 630
+ H H Q H+ QGH G H QGH HH Q H
Sbjct: 18 QGHQGHHGHQGHHHHQGHHGHHGHHHHQGHHGHHGHHQQQVH 59
>UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 731
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -2
Query: 269 ILRSGAT-RLTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 117
ILR G T + L +++ASSG + W+ + PL + + R + ++FS + ++NP
Sbjct: 658 ILRLGYTIAVVLIIIHVASSGFLGWVFDKPLENRLLRAAMVLFSALSVTLNP 709
>UniRef50_Q0UL67 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 648
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 517 RHEVEQRVHNRQGHEGVHLAAARQ-GHPPHHRRGAGQAHRSQGRR 648
R E E+R ++ G + +R+ GH HHR G+G+ HR RR
Sbjct: 60 RREKERRKREKRRMAGRSRSGSRERGHRRHHRGGSGERHRDGRRR 104
>UniRef50_Q2CHG7 Cluster: Parallel beta-helix repeat protein; n=4;
cellular organisms|Rep: Parallel beta-helix repeat
protein - Oceanicola granulosus HTCC2516
Length = 3143
Score = 33.9 bits (74), Expect = 3.7
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 517 RHEVEQRVHNRQGHEGV---HLAAARQGHPPHHRR-GAGQAHRSQGRRAVG 657
R V +R GH+G H+AA G P HHRR G + R+ GRR VG
Sbjct: 1837 RRRVGLGARHRHGHDGAARRHVAALPPG-PRHHRRDGQPRRPRAGGRRRVG 1886
Score = 33.5 bits (73), Expect = 4.9
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +1
Query: 496 RTPRAHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 648
R PR H + RV R G GV L R+ H P R G HR++ RR
Sbjct: 2342 RHPRLRGAHHLG-RVGRRDGGVGVDLRQLRRRHDPRRVRHRGDHHRARRRR 2391
>UniRef50_A1FX86 Cluster: Putative uncharacterized protein; n=1;
Stenotrophomonas maltophilia R551-3|Rep: Putative
uncharacterized protein - Stenotrophomonas maltophilia
R551-3
Length = 1258
Score = 33.9 bits (74), Expect = 3.7
Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 653 TARR-PWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCARG 501
TAR P C PRRW GG P R R PCR S + RCARG
Sbjct: 488 TARASPAAARGCARPRRWTGGRPRRPQLR-RWGHPCRARPSWSGTLARCARG 538
>UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens
"Keratin-associated protein 10-4; n=1; Takifugu
rubripes|Rep: Homolog of Homo sapiens
"Keratin-associated protein 10-4 - Takifugu rubripes
Length = 353
Score = 33.5 bits (73), Expect = 4.9
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWR 516
C CP R C C + RC SC C RC TS R
Sbjct: 149 CWCPTYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSCR 186
Score = 33.5 bits (73), Expect = 4.9
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWR 516
C CP R C C + RC SC C RC TS R
Sbjct: 275 CWCPTYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSCR 312
>UniRef50_Q4S3D3 Cluster: Chromosome 1 SCAF14751, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 1 SCAF14751, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 246
Score = 33.5 bits (73), Expect = 4.9
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +1
Query: 442 APSCPARDIPAPSTLCTSRTPR-----AHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 606
AP+C APST+ P A LRH+V H GH G+ ++A G PP
Sbjct: 139 APTCLTHS-SAPSTVAAGPRPLQREEDAVLRHDVLPLHHAAGGHFGLVVSAGGPGPPPPG 197
Query: 607 RRGAGQA-HRSQGRRAVGLRTIN 672
+ AG+ H R LR ++
Sbjct: 198 QLAAGRGPHHPHHRPLHHLRPVD 220
>UniRef50_Q3JTY8 Cluster: Putative uncharacterized protein; n=4;
Proteobacteria|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 1412
Score = 33.5 bits (73), Expect = 4.9
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 469 PAPSTLCTSRTPR-AHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 645
PA + T+R PR A RH Q +R+ +G AR+ P H R GA S+
Sbjct: 599 PACGSDATARVPRGARARHRYRQAAQSREIRDGRVRPGARRRSPRHARAGARGFRASRNT 658
Query: 646 R 648
R
Sbjct: 659 R 659
>UniRef50_Q1D0U8 Cluster: Putative uncharacterized protein; n=1;
Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
protein - Myxococcus xanthus (strain DK 1622)
Length = 603
Score = 33.5 bits (73), Expect = 4.9
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Frame = +1
Query: 502 PRAHLRHEVEQRVHNR--------QGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 657
PR H HE RV QGH GV + GH P H RG+GQ R + G
Sbjct: 16 PRVHAHHEAVARVEADGVALTAFVQGHAGVVI-----GHAPRHVRGSGQQQRQSEHQHGG 70
Query: 658 L 660
L
Sbjct: 71 L 71
>UniRef50_A6NIY6 Cluster: Uncharacterized protein MAN1B1; n=2; Homo
sapiens|Rep: Uncharacterized protein MAN1B1 - Homo
sapiens (Human)
Length = 865
Score = 33.5 bits (73), Expect = 4.9
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -2
Query: 629 CACPAPRRW*GGCPCRAAAR--CTPSCPCRL*TR-CSTS--WRRCARGVLDVHNVEG 474
C C + RW C CR A R T SC CR R C T + C VL +H V G
Sbjct: 485 CCCRSTGRWCYTCCCRCAGRWWYTHSCCCRSIGRWCYTHSLLQACRSVVLHIHAVAG 541
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 279 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 413
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630024D08
product:hypothetical Histidine-rich region containing
protein, full insert sequence; n=1; Mus musculus|Rep: 3
days neonate thymus cDNA, RIKEN full-length enriched
library, clone:A630024D08 product:hypothetical
Histidine-rich region containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 139
Score = 33.1 bits (72), Expect = 6.5
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +1
Query: 511 HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 657
H RH +R H RQ EGV R+GHP HH Q H +G +G
Sbjct: 81 HQRHY--ERQHVRQHVEGVGQHGERRGHPAHHHL---QHHEHEGIMKMG 124
>UniRef50_UPI00005A5D2B Cluster: PREDICTED: similar to Protein
CXorf36 precursor; n=2; Canis lupus familiaris|Rep:
PREDICTED: similar to Protein CXorf36 precursor - Canis
familiaris
Length = 628
Score = 32.7 bits (71), Expect = 8.6
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 103 PTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAPDLRMFRTW 282
P+YPA + D + E+ RL+ + + RI A K C ++R+ F+ W
Sbjct: 95 PSYPANYSDDSKTWRPVEVSRLVSKQQSDISDRRICASAAAPKTCSIERILRKTGRFQKW 154
>UniRef50_Q8CVF4 Cluster: Penicillin G acylase; n=4; Leptospira|Rep:
Penicillin G acylase - Leptospira interrogans
Length = 838
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 403 KFPDSNLMKSIIFVVAMSNW-MESLTLISGSG*RMVRPSCVTKYGTFLGPVPH 248
KF SN + + V+ +NW ++ L +SGS ++ PS T G L PH
Sbjct: 260 KFSKSNELSDLDLVIQKTNWILKELPSLSGSNSWVIGPSRSTTGGAILANDPH 312
>UniRef50_Q1YI78 Cluster: Putative uncharacterized protein; n=1;
Aurantimonas sp. SI85-9A1|Rep: Putative uncharacterized
protein - Aurantimonas sp. SI85-9A1
Length = 2567
Score = 32.7 bits (71), Expect = 8.6
Identities = 21/70 (30%), Positives = 25/70 (35%)
Frame = +1
Query: 424 VTWGVWAPSCPARDIPAPSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 603
+T G+W C AR P+ + R PR R H R H R PPH
Sbjct: 2442 MTDGIWRMICVARTTTRPAAVHRPRPPRRGARPRPVLHRHRRSSARPRHRCVLRP-VPPH 2500
Query: 604 HRRGAGQAHR 633
R A R
Sbjct: 2501 RHRALRAASR 2510
>UniRef50_A5P378 Cluster: Putative uncharacterized protein; n=3;
Proteobacteria|Rep: Putative uncharacterized protein -
Methylobacterium sp. 4-46
Length = 1338
Score = 32.7 bits (71), Expect = 8.6
Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +1
Query: 496 RTPRAHLRHE----VEQRVHNRQGHE-GVHLAAARQGH-PPHHRRGAGQAH-RSQGRR 648
R RAH RH R H G G AA R+ H PP HR GA + H R GRR
Sbjct: 955 RAERAHARHRGAGGSRLRRHRGGGRAVGPEGAAIRRAHRPPDHRCGAARRHERPAGRR 1012
>UniRef50_A0VKY2 Cluster: Putative uncharacterized protein; n=1;
Delftia acidovorans SPH-1|Rep: Putative uncharacterized
protein - Delftia acidovorans SPH-1
Length = 399
Score = 32.7 bits (71), Expect = 8.6
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Frame = -2
Query: 656 PTARRPWLRCACPAPR-RW*GGCPCRAAARCT-----PSCPCRL*TR--CSTSWRRCARG 501
PTARR W R C P RW R RC P CP R R C WR R
Sbjct: 301 PTARRGWARPRCRLPSGRWSSARWRRRPRRCPRRRTGPRCPWRPSRRAACRAPWRAGCRS 360
Query: 500 VLDVH 486
H
Sbjct: 361 ATGSH 365
>UniRef50_Q8MS04 Cluster: RH49436p; n=9; Endopterygota|Rep: RH49436p
- Drosophila melanogaster (Fruit fly)
Length = 634
Score = 32.7 bits (71), Expect = 8.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 511 HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR---RGAGQAHRSQGRRAVGLRTIN 672
H + + +Q+ H++Q H+AAA+Q HH A QAH + A+ N
Sbjct: 508 HHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAAN 564
>UniRef50_A5K9H1 Cluster: RNA-binding protein, putative; n=1;
Plasmodium vivax|Rep: RNA-binding protein, putative -
Plasmodium vivax
Length = 1542
Score = 32.7 bits (71), Expect = 8.6
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = +1
Query: 442 APSCPARDIPAPSTLCTSRTPRAHLRHEVEQRV--HNRQGHEGVHLAAARQGHPPHHRRG 615
AP A D P TL R L + + H+ +GH H RQ H HR+
Sbjct: 1031 APGGGAPDAGGPLTLEVQRQEERSLEKSQKHQTNDHHGEGHREDHHDDHRQDHRQDHRQD 1090
Query: 616 AGQAHRSQGRR 648
Q HR R+
Sbjct: 1091 HRQDHRQDHRQ 1101
>UniRef50_A6R803 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 576
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 430 WGVWAPSCPARDIPAPSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 609
WG W P + AP+ ++ + +HL H ++Q + R H Q HPP R
Sbjct: 206 WGQWKRKHPGHESSAPNGHISNLSSHSHLPHPMKQ-LRRRYSRSHTH-----QQHPPSER 259
Query: 610 RGAGQAH 630
+ H
Sbjct: 260 QSRVSEH 266
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,713,809
Number of Sequences: 1657284
Number of extensions: 15878307
Number of successful extensions: 51287
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 47948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51130
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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