Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00906
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   146   3e-36
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   144   8e-36
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   144   1e-35
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.3  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   3.3  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   4.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.8  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   7.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.7  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.7  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  146 bits (353), Expect = 3e-36
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +1

Query: 1   IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
           +FLRNRLKYAL G EV  I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+
Sbjct: 46  VFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDI 105

Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
           KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRV 129



 Score =  128 bits (308), Expect = 1e-30
 Identities = 56/81 (69%), Positives = 68/81 (83%)
 Frame = +3

Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
           G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF++    M+TGGRN+GR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGR 191

Query: 438 VGTIVSRERHPGSFDIVHIKD 500
           VGTIV RE H GSF+I+H+KD
Sbjct: 192 VGTIVHREHHLGSFEIIHVKD 212



 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +2

Query: 515 FATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
           FATRL+NVF+IG+  K++ISLP+GKG++L+I EERD+R A K
Sbjct: 218 FATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  144 bits (350), Expect = 8e-36
 Identities = 65/84 (77%), Positives = 74/84 (88%)
 Frame = +1

Query: 1   IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
           +FLRNRLKYAL G EV  I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+
Sbjct: 46  VFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDI 105

Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
           KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRV 129



 Score =  128 bits (308), Expect = 1e-30
 Identities = 56/81 (69%), Positives = 68/81 (83%)
 Frame = +3

Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
           G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF++    M+TGGRN+GR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGR 191

Query: 438 VGTIVSRERHPGSFDIVHIKD 500
           VGTIV RE H GSF+I+H+KD
Sbjct: 192 VGTIVHREHHLGSFEIIHVKD 212



 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +2

Query: 515 FATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
           FATRL+NVF+IG+  K++ISLP+GKG++L+I EERD+R A K
Sbjct: 218 FATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  144 bits (349), Expect = 1e-35
 Identities = 65/84 (77%), Positives = 74/84 (88%)
 Frame = +1

Query: 1   IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
           +FLRNRLKYAL G EV  I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+
Sbjct: 46  VFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDI 105

Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
           KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 106 KGRFTVHRITAEEAKYKLCKVKRV 129



 Score =  128 bits (308), Expect = 1e-30
 Identities = 56/81 (69%), Positives = 68/81 (83%)
 Frame = +3

Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
           G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF++    M+TGGRN+GR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGR 191

Query: 438 VGTIVSRERHPGSFDIVHIKD 500
           VGTIV RE H GSF+I+H+KD
Sbjct: 192 VGTIVHREHHLGSFEIIHVKD 212



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +2

Query: 515 FATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
           FATRL+NVF+IG+  K++ISLP+GKG++L+I EERD+R A K
Sbjct: 218 FATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 326 QSQRFHPVRHRNYED 370
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 384 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 488
           KFE   LC + G   L R+G  +  E   GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 293 WPHHPLPRPTYQSQR 337
           WPHH LP   + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 517 EGVPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 380
           E  P ES M  + K+   L   T  P RP L+P + +   P S L+
Sbjct: 416 ERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QACGTGPKNVPYLVTHDGRTI 305
           Q+CG   KN+ Y+  +D RT+
Sbjct: 276 QSCGRAVKNMVYIPRYDKRTV 296


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 296 PHHPLPRPTYQSQRFHPVRHRNYEDY 373
           PH+  P    + Q+ HPV+  N+  Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 222 SLLRGDTVDCESALNIID*TKQ 157
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/75 (24%), Positives = 39/75 (52%)
 Frame = +1

Query: 70  LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 249
           LI++  + R D  + + ++ ++   K  +  RLI  +    +  R+T E+AK+ L  V  
Sbjct: 326 LIELSQEHRLDEFFVSYWVSLIKSRKQKDKKRLISLLDTSISQIRVTHEQAKF-LLSVIP 384

Query: 250 VAPDLRMFRTW*RMM 294
           V  D +  +++ R++
Sbjct: 385 VNQDFKALQSYRRIL 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,825
Number of Sequences: 5004
Number of extensions: 60705
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)