Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00906
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 126 2e-29
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 125 3e-29
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 125 4e-29
12_02_0759 - 22882435-22882731 32 0.49
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384 31 0.85
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 3.4
01_05_0567 - 23334967-23335006,23335225-23335394 29 4.5
07_01_1127 + 10456895-10457388,10457488-10458112 28 6.0
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 6.0
05_03_0545 - 15244647-15245147,15245342-15245635 28 6.0
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 6.0
04_01_0282 - 3764110-3764666,3765117-3765180 28 6.0
11_05_0087 + 18970741-18972702 28 7.9
06_03_1451 + 30252366-30252373,30252621-30252867,30253441-302538... 28 7.9
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.9
04_01_0252 - 3329712-3331061 28 7.9
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 28 7.9
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 126 bits (303), Expect = 2e-29
Identities = 52/81 (64%), Positives = 68/81 (83%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GR
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGR 191
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VG I +RE+H GSF+ +H++D
Sbjct: 192 VGVIKNREKHKGSFETIHVED 212
Score = 117 bits (282), Expect = 8e-27
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD
Sbjct: 46 LIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDT 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
KGRF + + E+AK+KLCKV+ V
Sbjct: 106 KGRFRLQSVKDEDAKFKLCKVRSV 129
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAA 637
GH FATRL NVF IGKG K ++SLP+GKGI+L+I EE+ KR AA
Sbjct: 215 GHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 125 bits (302), Expect = 3e-29
Identities = 52/81 (64%), Positives = 68/81 (83%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GR
Sbjct: 148 GQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGR 207
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VG I SRE+H GSF+ +H++D
Sbjct: 208 VGVIKSREKHKGSFETIHVED 228
Score = 124 bits (298), Expect = 9e-29
Identities = 58/84 (69%), Positives = 67/84 (79%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD
Sbjct: 62 LILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDT 121
Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
KGRF +H I E+AK+KLCKV+ V
Sbjct: 122 KGRFRLHSIKDEDAKFKLCKVRSV 145
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIA 634
GH FATR+ NVF IGK K ++SLP+GKGI+L+I EE KR A
Sbjct: 231 GHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSIIEEARKRNA 273
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 125 bits (301), Expect = 4e-29
Identities = 51/81 (62%), Positives = 68/81 (83%)
Frame = +3
Query: 258 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 437
G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GR
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGR 191
Query: 438 VGTIVSRERHPGSFDIVHIKD 500
VG I +RE+H GSF+ +H++D
Sbjct: 192 VGVIKNREKHKGSFETIHVED 212
Score = 117 bits (282), Expect = 8e-27
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = +1
Query: 1 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
+ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD
Sbjct: 46 LIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDT 105
Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
KGRF + + E+AK+KLCKV+ V
Sbjct: 106 KGRFRLQSVKDEDAKFKLCKVRSV 129
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +2
Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAA 637
GH FATRL NVF IGKG K ++SLP+GKGI+L+I EE+ KR AA
Sbjct: 215 GHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
>12_02_0759 - 22882435-22882731
Length = 98
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 442 APSCPARDIPAPSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVH-LAAARQGHPPHHRRGA 618
AP+ + P T +R R H RH + +R R+G G L A R P H G
Sbjct: 20 APASNRQLATDPFTQRGAREGRTHERHHLVERGQRRRGDRGAGVLGADRVEEGPQH--GG 77
Query: 619 GQAHRSQG 642
G+ R +G
Sbjct: 78 GERRRGRG 85
>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
Length = 335
Score = 31.1 bits (67), Expect = 0.85
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 623 CPAPRRW*GGCPCRAAARCTPSCPCR-L*TRCSTSWRRCARGVLDVHNVEGAGMSLA 456
C AP PC AA TP CP R L S + RR A GVL++ EG G+ A
Sbjct: 113 CLAPAAAAAALPC-AATSPTPPCPLRELLREYSAAVRRVACGVLEL-MAEGLGVGPA 167
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 472 APSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRA 651
A ST C +T H+ HE+E++V R+ R+ PP R +A +
Sbjct: 45 ACSTKCAGKTGADHMSHEIEEKVRARR---------RRRSTPPPRPRPCREARELNSTQE 95
Query: 652 VGLRTIN 672
+G R ++
Sbjct: 96 MGGRPVS 102
>01_05_0567 - 23334967-23335006,23335225-23335394
Length = 69
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 442 APSC-PARDIPA-PSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 603
A SC PA P P+T C R PRA + H + Q+ +R AA R H
Sbjct: 10 AASCLPAPRAPTCPTTCCMLRLPRATVTHRLAQQRSSRCVRTSDVAAACRCSRQSH 65
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 529 QPRGEGVPVESLMCTMSKEPGCLSRDTMVPTRPKLRPP 416
+P+ + ++L+C KEPG SRD + P + RPP
Sbjct: 305 RPQTDSSAKKTLICYNCKEPGHYSRDCLQPRQS--RPP 340
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 600 RRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPWSP*CA--QCRRSRDVSRGTRWCPHAPS 427
+R+ LP+ E YA L + V + P S A +CR+SR S+ W P+ S
Sbjct: 396 QRVTLPKLVESYARDARLSPERLVDAVQRCLPESLRAAVQRCRQSRPASKVVEWAPYRHS 455
Query: 426 Y 424
+
Sbjct: 456 F 456
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 529 QPRGEGVPVESLMCTMSKEPGCLSRDTMVPTRPKLRPP 416
+P+ + ++L+C KEPG SRD + P + RPP
Sbjct: 197 RPQTDSSAKKTLICYNCKEPGHYSRDCLQPRQS--RPP 232
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 577 AARQGHPPHHRRGAG 621
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>04_01_0282 - 3764110-3764666,3765117-3765180
Length = 206
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 491 HQGLHGHTFATRLNNVFIIGKGTKAYISLP 580
H+G+HGH A ++V G+G A +SLP
Sbjct: 17 HKGIHGHHGARLPSSVERGGRGKAALLSLP 46
>11_05_0087 + 18970741-18972702
Length = 653
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 502 PRAHLRHEVEQRVHNRQGHEGVHLAAARQ----GHPPHHRRGAGQAHRSQGRR 648
P+ H+ + +H R GH H A + G P HHR GQ+ R+ R
Sbjct: 51 PQLHVVRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHR---GQSVRAGANR 100
>06_03_1451 +
30252366-30252373,30252621-30252867,30253441-30253893,
30253971-30254555
Length = 430
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 511 VPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVII--HKFPDSNLMKSIIFVVAMSNWME 338
VPV + S +P + R LRPP++I H + +++S F V+++ +
Sbjct: 219 VPVGARCDDFSTDPSLQEEHWLASFRSSLRPPLLIKRHNYAAGLILRSKNFAVSLAELIS 278
Query: 337 SLTLISGSG 311
+ + SG
Sbjct: 279 AAGKPNNSG 287
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 285 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 419
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 529 QPRGEGVPVESLMCTMSKEPGCLSRDTMVPTRPKLRPP 416
+P+ + ++L+C KEPG SRD + P + RPP
Sbjct: 382 RPQTDSSAKKTLICYNCKEPGHYSRDCLQPRQN--RPP 417
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 663 P*PYCAATLAAMRLSRSSAMVRRMPLPRGSEMYAFVPLPI---MNTLFNLVAKVCPWSP 496
P PYC R R S ++R P GS+ +++VP + M +L A+ P SP
Sbjct: 127 PEPYCTP-FRDTRSFRDSQSLKRSPEYSGSDQFSYVPRRVDGYMRKPLDLRAQKMPSSP 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,298,514
Number of Sequences: 37544
Number of extensions: 488948
Number of successful extensions: 1527
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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