Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00906
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   118   4e-27
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.1  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.1  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    28   7.1  
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    28   7.1  
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    28   7.1  
Z66564-4|CAA91476.1|  267|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF039719-11|AAB96750.1|  191|Caenorhabditis elegans Hypothetical...    27   9.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  118 bits (284), Expect = 4e-27
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +1

Query: 1   IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 180
           +FLRNRLKYAL   E  KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD 
Sbjct: 45  LFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDT 104

Query: 181 KGRFTIHRITPEEAKYKLCKVKRV 252
           KGR+ +HRI   EA +KLCKVK V
Sbjct: 105 KGRYVVHRIQAAEADFKLCKVKSV 128



 Score =  113 bits (271), Expect = 1e-25
 Identities = 52/79 (65%), Positives = 61/79 (77%)
 Frame = +3

Query: 264 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 443
           K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  +TGGRN+GRVG
Sbjct: 133 KGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVG 192

Query: 444 TIVSRERHPGSFDIVHIKD 500
            I  RER PG+ DI+HIKD
Sbjct: 193 IIGHRERLPGASDIIHIKD 211



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +2

Query: 506 GHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 640
           GH+FATR++NVF+IGKG KA +SLP G GIRL+IAEERDKR+A K
Sbjct: 214 GHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -2

Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCARG 501
           C C  PR     C CR    C  +C C   TRC T  R C  G
Sbjct: 86  CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPCCCG 122


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -2

Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCARG 501
           C C  PR     C CR    C  +C C   TRC T  R C  G
Sbjct: 84  CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPCCCG 120


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -2

Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCARG 501
           C C  PR     C CR    C  +C C   TRC T  R C  G
Sbjct: 85  CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPCCCG 121


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -2

Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCARG 501
           C C  PR     C CR    C  +C C   TRC T  R C  G
Sbjct: 86  CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPCCCG 122


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -2

Query: 629 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCARG 501
           C C  P+     C CR    C  +C C   TRC T  R C  G
Sbjct: 85  CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCCRPCCCG 121


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 401 LVYDHGRP*LGACGHHRVPRETSRLLRH 484
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 401 LVYDHGRP*LGACGHHRVPRETSRLLRH 484
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 299 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 382
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical
           protein C03F11.1 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 305 DGAAIMR-YQVRNILRSGATRLTLHNLYLASSGVIRWIVNLPLTS 174
           D  A+ + Y+VR+   +   R+T  +LYLA  GVI  +V   +T+
Sbjct: 53  DSTAVKQVYRVRSERLTNRVRITDRSLYLALFGVILMLVESEITA 97


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 442 APSCPARDIPAPSTLCTSRTPRAHLRHEVEQR 537
           AP+ P R +P   +  ++  PR H+  +VE R
Sbjct: 330 APAVPTRRLPPHPSSSSAAPPRGHMSDKVESR 361


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 442 APSCPARDIPAPSTLCTSRTPRAHLRHEVEQR 537
           AP+ P R +P   +  ++  PR H+  +VE R
Sbjct: 330 APAVPTRRLPPHPSSSSAAPPRGHMSDKVESR 361


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 442 APSCPARDIPAPSTLCTSRTPRAHLRHEVEQR 537
           AP+ P R +P   +  ++  PR H+  +VE R
Sbjct: 403 APAVPTRRLPPHPSSSSAAPPRGHMSDKVESR 434


>Z66564-4|CAA91476.1|  267|Caenorhabditis elegans Hypothetical
           protein F52D10.5 protein.
          Length = 267

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +1

Query: 430 WGVWAPSCPARDIPAPSTLCTSRTPRAHLRHEVEQRVHNRQGHEGVHLA 576
           WG+       +DI  P  +C +    A  + E + +V   QG     +A
Sbjct: 170 WGIHVERVEIKDIRLPREMCRAMAAEAEAQRESDAKVVTAQGELDASMA 218


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 538 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 633
           VH+   H+G H    R+ H  HH    G  H+
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHK 146


>AF039719-11|AAB96750.1|  191|Caenorhabditis elegans Hypothetical
           protein K04F10.1 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 315 LGSGWCGHHALPSTEHS*VRCHTLDFTQLVLSLLRGDTVDCESALNII 172
           LG GWC  +   S E+  + C  L    + + L R +    + A++I+
Sbjct: 91  LGKGWCSCNPRKSGENYGLDCEILQVDDVCIVLTRNEDKITDCAVDIV 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,380
Number of Sequences: 27780
Number of extensions: 367217
Number of successful extensions: 1068
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)