Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00905
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.8  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.8  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.8  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 546 YGAGYELPADLKTQTAFST 602
           YGAGY+L A  K  T  ST
Sbjct: 78  YGAGYDLAARRKNATREST 96


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 317 YLLSLVVALTDERKLFVHIVARGKPLILSRLVTFPSPQ*ST 195
           YL SL  +L    +LF H  A  +P+ L      PSP+ S+
Sbjct: 46  YLFSL--SLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSS 84


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 313 KYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKD 468
           K P G+PS   T ++LP T  T+ S   P+   RS+  +  + P  ++   D
Sbjct: 69  KSPQGAPSPSSTPSSLP-TQRTSTSN--PTYSSRSVMTSCSSVPTTASYGSD 117


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 369 CNWKCRCRPQTRRGSCWVFAFPRCGP 292
           CN K  C+ ++   SC V   P   P
Sbjct: 135 CNGKPDCKDESDENSCTVETDPNRAP 160


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = +1

Query: 250 PRATM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGA 429
           P  T  T     + + TT+ S  PT  P  +      P  +   A+     + G +L G 
Sbjct: 162 PPTTSTTTRTTLTTKFTTKPSTKPTNKPVVVTKPPQAPPFATVGANLQATVSFGTNLVGG 221

Query: 430 LQTSPG 447
           +  S G
Sbjct: 222 IVRSLG 227


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 148 MYHLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFP 252
           +Y L+    D  + + V YW +    N   I G P
Sbjct: 256 LYELIDRKYDENVDYQVRYWLQKGAPNNKLILGIP 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,666
Number of Sequences: 336
Number of extensions: 3346
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)