Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00905
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    30   0.39 
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   8.4  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = +1

Query: 307 ESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKDRRCLRI 486
           E+KYPT SP+   +  + P    TTA+    SA   SL        G     ++ R L  
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNGRALNY 308

Query: 487 F*KF*RH*NLERDLAKTAYTMEPG 558
              F    +  +D    +YT EPG
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPG 332


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 91  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 210
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 283 SSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQTSPGLST 456
           +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S        P  ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 268 TNS--LRSSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQ 435
           TNS  L ++  + T  +  PTG  S L T  T T+P TS ++ S  +P     S      
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276

Query: 436 TSPGLST 456
             P  ST
Sbjct: 277 PLPTTST 283


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 91  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 210
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 179 LSIGIFTRWYIPK*GIGEYAYNR 111
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 279 QTVRSHCSSREASYL-VKVSHFSFSPVIDMVYQPS 178
           Q++    SSR+ + L V  S   FSPV + VY PS
Sbjct: 124 QSIYDFSSSRQINALNVGQSSSPFSPVSEKVYDPS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,398
Number of Sequences: 5004
Number of extensions: 55708
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)