Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00905
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   7.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   7.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   7.9  

>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +1

Query: 274 SLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSAR 408
           S R+S RA +  ++ PTG+P+   T    PVT+ T++S + P+A+
Sbjct: 169 SARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPAAQ 210


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 283 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSGALQTSPGLST 456
           SS  +TT  +   T +PS    T T+P T+    + +    R      +G L TS  + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398

Query: 457 RPKDRRC 477
            P    C
Sbjct: 399 PPYPENC 405


>AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9b protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 123 VLPNTLLRYVPPREDPDRQRAGTPCRLL 206
           V P+ L+   PP  DP  QR+GTP  LL
Sbjct: 4   VSPSNLVFPPPPSPDPYTQRSGTPSALL 31


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 268 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 447
           T +  ++   TT +    T +P+   TT T P T+ TTA     +      +    T   
Sbjct: 255 TTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTT 314

Query: 448 LSTRPK 465
            +T PK
Sbjct: 315 TTTTPK 320


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 283  SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 462
            S+ R +TR S   T   S   T  T+  + +T  + + P  +GRSLS   +    +  R 
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371

Query: 463  KDRR 474
              RR
Sbjct: 2372 PPRR 2375


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 283  SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 462
            S+ R +TR S   T   S   T  T+  + +T  + + P  +GRSLS   +    +  R 
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371

Query: 463  KDRR 474
              RR
Sbjct: 2372 PPRR 2375


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 283  SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 462
            S+ R +TR S   T   S   T  T+  + +T  + + P  +GRSLS   +    +  R 
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371

Query: 463  KDRR 474
              RR
Sbjct: 2372 PPRR 2375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,680
Number of Sequences: 27780
Number of extensions: 325392
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)