Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00902
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    29   0.96 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.2  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.9  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   5.1  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   6.8  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   6.8  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -2

Query: 479 AVFRHLDRSGLNHSWIT*QTVGRACR------LQCPWARACA 372
           A F+ LD   +N SW   QTV   C       ++ PW R CA
Sbjct: 197 AFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 565 PSSSATSLQDFILPNMGLQDITIQLQNVT-EPNPRNPPMSV*NVAKLK*NTRLKPQIRFL 741
           PSS  +S   F        D      ++T +P+PR+P      +  LK NTR  P+IR++
Sbjct: 79  PSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRSP------LTPLKGNTRASPEIRYV 132


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = -2

Query: 212 DESVHFNTHLALVREYPGDIALVELRSDED-----THCGATAATGVVHVYSVAEMPVVEV 48
           +E VH+NT+  +V E    + + EL  D D      +   T  T   H   ++ +P  + 
Sbjct: 212 EEPVHYNTYDGVVNEPNSSVIIEELDDDYDELNDPMNNNDTPITNSTHSAQMSNLPTHDS 271

Query: 47  SEASVHGPV 21
            +  + G V
Sbjct: 272 MDIDMGGAV 280


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 232 SPAF-RTVTNLSISIHILRWSENIQGTLRSSNFGVMKIRTVV 110
           SP F +T T  +  IHI ++SE +   L   +   + +RT++
Sbjct: 56  SPLFIKTTTRPTALIHITKYSEALASRLLKGHMTQLSLRTIL 97


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 514 KDKKYPDRRAMGFPFDRPSSSATSLQDFILPNMGLQDITIQLQNVTEPN 660
           K K+  + RAM   F +PS    S + FI     L    ++ + VT+P+
Sbjct: 203 KKKRDKETRAMA-SFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPS 250


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 205 DSSLS*TPERIILSVSRGVFHNY 273
           D +LS  P+ IILS+ RG+   Y
Sbjct: 81  DFTLSMVPKSIILSIQRGLLRRY 103


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 245 PSVAESSITIPFEQTFRDLSAQGNDPRRDELAT-FN 349
           PS+ ESS+ +P +   +D+    N   R+EL + FN
Sbjct: 462 PSLIESSMYVPIKGFVQDIKCIQNSRERNELVSQFN 497


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 221 QDSDESVHFNTHLALVREYPGDIALVE 141
           +D DE  + N    L+ +YP DI   E
Sbjct: 217 EDEDEDNNNNNRWLLIEQYPSDIVAYE 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,131
Number of Sequences: 5004
Number of extensions: 69255
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)