Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00902
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 37 0.020
08_02_0025 - 11356617-11356968,11357213-11357481 35 0.082
10_04_0014 + 7578921-7579649 33 0.33
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 32 0.44
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718 29 3.1
12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993... 29 4.1
01_05_0262 - 20137391-20137861,20137937-20138100,20138140-201382... 29 4.1
01_04_0148 + 16818631-16819173,16819264-16819464 29 5.4
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 28 7.1
03_02_0517 + 9054816-9055655 28 7.1
02_02_0025 + 6183328-6186127,6186265-6186623 28 7.1
12_01_0634 - 5264012-5264259,5264865-5265085,5265912-5266120,526... 28 9.4
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 28 9.4
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 36.7 bits (81), Expect = 0.020
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Frame = +2
Query: 197 NGQIRHCPERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGCG-WPQ 373
N ++ PE++++ CP++ S F+Q DL A + +D N+ P
Sbjct: 341 NLKLHKLPEKKKDPGCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFTVLAPTPM 400
Query: 374 HM-----LVPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNILIG 538
+ L+P G G P ++ D +D D GK++ + SF NI +G
Sbjct: 401 RLQLADSLLPGGDSGGCPVKIRDFFIPVDFVVLDMDTGKEMQLILGRSFLSTAGGNIDVG 460
>08_02_0025 - 11356617-11356968,11357213-11357481
Length = 206
Score = 34.7 bits (76), Expect = 0.082
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +2
Query: 113 HSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRHCPERRRE*YCPSVAESSITIPFEQTF 292
H+ YL + P+ + + N + PE++++ CP++ S T F+Q
Sbjct: 9 HARYLKDILNNKRPLPITEMVKLMEECSNAILHRLPEKKKDLGCPTITCSIGTQHFDQVL 68
Query: 293 RDLSAQGNDPRRDELATFNY 352
DL A N +D L NY
Sbjct: 69 YDLGASVNIMPKDVLDKLNY 88
>10_04_0014 + 7578921-7579649
Length = 242
Score = 32.7 bits (71), Expect = 0.33
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Frame = +2
Query: 176 PTQDVY*NGQIRHCPERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYC 355
PT + N + PE++++ CP++ S F+Q DL A + +D N+
Sbjct: 85 PTTEHCSNVILHKLPEKKKDPRCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFT 144
Query: 356 GCG-WPQHMLV-------PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD 511
P + + P G E +P +++ D +D D GK+ + + F
Sbjct: 145 VLAPTPMRLQLADSSVHCPVGIEEDVPVKIWDFFIPVDFVVLDMDTGKETSLILGHPFLS 204
Query: 512 *RIRNILIG 538
NI +G
Sbjct: 205 TAGANIDVG 213
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 32.3 bits (70), Expect = 0.44
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Frame = +2
Query: 197 NGQIRH-CPERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCG-CGWP 370
N I H PE++++ CP++ S F++ DL A + +D N+ P
Sbjct: 390 NDVILHKLPEKKKDPRCPTITCSIRAHQFDRALCDLGASVSVMPKDVFDKLNFTVLASTP 449
Query: 371 QHMLV-------PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNI 529
+ + P G +PF++ +D +D D GK+ + SF NI
Sbjct: 450 MRLQLANSSVRYPAGIAEEVPFKIRDFFIPFDFVVLDMDTGKETPLILGRSFLSTTGANI 509
Query: 530 LIG 538
+G
Sbjct: 510 DVG 512
>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
Length = 756
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Frame = +2
Query: 197 NGQIRH-CPERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGCG-WP 370
N I H P+++++ CP++ S F+Q DL A + +D FN+ P
Sbjct: 512 NNLILHKLPKKKKDPGCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKFNFTVLSPTP 571
Query: 371 QHMLV-------PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNI 529
+ + P G +P ++ ++D +D D GK+ + F NI
Sbjct: 572 MRLQLADSSVRYPAGIAEDVPVKIRDFFISFDFVVLDMDTGKETPLILGRPFLSTARVNI 631
Query: 530 LIG 538
+G
Sbjct: 632 DMG 634
>12_02_0554 +
20351660-20352299,20398588-20398907,20399120-20399344,
20399375-20399818
Length = 542
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Frame = +2
Query: 206 IRHCPERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGCGWPQHMLV 385
I H +++ CP+++ S F+Q DL A + D N+ +
Sbjct: 346 ILHKLSEKKDPVCPTISCSIRAQQFDQALYDLGASVSVMPNDVFDKLNFTLA--DSSVRY 403
Query: 386 PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNILI--GALW 547
P G +P ++ +D +D D GK+ + F NI + G++W
Sbjct: 404 PAGIAEDVPVKIRDFFIPFDFVVLDMDTGKETPLILGRPFLSTVGANIDVGTGSIW 459
>01_05_0262 -
20137391-20137861,20137937-20138100,20138140-20138220,
20138437-20138614,20138786-20139164,20139183-20139358
Length = 482
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Frame = +2
Query: 218 PERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGCG-WPQHMLV--- 385
PE++++ CP++ S F+Q DL A + +D FN+ P + +
Sbjct: 356 PEKKKDPGCPTITCSIGAQQFDQALCDLGASVSVMPKDIFDKFNFTVLAPTPMRLQLADS 415
Query: 386 ----PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNILIG 538
P G +P ++ D +D D GK++ + F NI +G
Sbjct: 416 SVRYPTGIVEDVPVKIRDFFIPVDFVVLDMDTGKEMPLILGRPFLSIAGANIDVG 470
>01_04_0148 + 16818631-16819173,16819264-16819464
Length = 247
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Frame = +2
Query: 218 PERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGC-GWPQHMLV--- 385
PE++++ CP++ S F+QT+ DL A + +D N+ P + +
Sbjct: 41 PEKKKDPGCPTITCSIGAQQFDQTWCDLGASVSVMPKDVFDKLNFTVLEPTPMRLQLADS 100
Query: 386 ----PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNILIG 538
P G +P ++ D +D D GK++ + F NI +G
Sbjct: 101 SVRYPAGIAENVPVKIRDFFIPVDFVVLDMDMGKEMPLILGRPFLSTAGANIDVG 155
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 140 VRRAQCPLDILGPTQDVY*NGQIRHCPERRRE*YCPSVAESSITIPFEQTFRDLS--AQG 313
V +AQ P+ + PT + N R E ++E + V+ESSI L
Sbjct: 145 VTQAQAPVPVPEPTIEPNNNSLSRRLDEGQKEVHAQPVSESSIIRKASSVMEVLKDVLDS 204
Query: 314 NDPRRDELAT 343
DPR E AT
Sbjct: 205 MDPRHPEGAT 214
>03_02_0517 + 9054816-9055655
Length = 279
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 282 NRHSATYPLRAMIHDATNSLPSITAAAAGLSTCSCPRALKPACPSNCLLC 431
+R A P A S+PS+T A +G C A +P + + C
Sbjct: 104 SRLEAAAPRPPASKAAVESMPSVTVAGSGAHCAVCQEAFEPGASAREMPC 153
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 560 SNGNPIARLSGYFLSFNHRSSTLPHK*AVFRHLDRSGLNHS 438
S GN + +L+ +L N+ S T+P +RHL++ L+H+
Sbjct: 482 SIGN-LVKLTELYLDGNNFSGTIPASLGQWRHLEKLNLSHN 521
>12_01_0634 -
5264012-5264259,5264865-5265085,5265912-5266120,
5266133-5266677,5266717-5266849,5266957-5267262
Length = 553
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Frame = +2
Query: 218 PERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGCG-WPQHMLVPKG 394
PE++++ CP++ S T F+Q DL A + +D N+ P H+ V
Sbjct: 256 PEKKKDPGCPTITCSIRTQKFDQALCDLGASVSVLPKDVFDKLNFMVLAPTPMHLQVADS 315
Query: 395 T---EAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSF 505
+ G+ + + D +D D GK+ + F
Sbjct: 316 SVRYPPGIAKDVPDCFISVDFVVLDMDTGKETLLILGRPF 355
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Frame = +2
Query: 218 PERRRE*YCPSVAESSITIPFEQTFRDLSAQGNDPRRDELATFNYCGCG-WPQHMLV--- 385
PE++++ CP++ S F+Q F DL A + +D N+ P +
Sbjct: 439 PEKKKDPGCPTITCSIGAQQFDQAFCDLGASVSVMPKDVFDKLNFTVLAPTPMRLQAADS 498
Query: 386 ----PKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCD*RIRNILIG 538
P G +P ++ D +D D GK+ + F NI +G
Sbjct: 499 SVRYPAGIVEDVPVKIRDFFIPVDFVVLDMDTGKETPLILGRPFLSTTGANIDVG 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,225,250
Number of Sequences: 37544
Number of extensions: 497669
Number of successful extensions: 1548
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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