Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00901X
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 29 0.39
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 28 0.69
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 0.91
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 2.8
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 3.7
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 4.8
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 6.4
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 8.4
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 25 8.4
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 29.1 bits (62), Expect = 0.39
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 245 TKASYPVKVSHFSFSPVIDVVYQP-STNRYL 156
T+ PVK H+ SPV DV Y P TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 28.3 bits (60), Expect = 0.69
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -2
Query: 216 SLFLLPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 49
SL ++P N GV LY + G Y V+ D T L + L R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723
Query: 48 V 46
+
Sbjct: 724 M 724
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 0.91
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -1
Query: 430 VCSAPRTDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVGYLLSLAVALTDERKLFVHM* 251
V +PRTD PR +++V++ +V +D N +G + TDE + + +
Sbjct: 396 VAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIGL---NPKSFTDEEREILTL- 451
Query: 250 LRRKPLTLS 224
R P+ LS
Sbjct: 452 FRNPPMRLS 460
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 372 AALKLLPSARGRSVRGALQTSPGLSTPPKDSSLPTDILKI 491
A + L S+ S+ + TSP L KD+S +DILK+
Sbjct: 215 ARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKM 254
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 481 ISVGNDESFGGVDNPGDVCSAPRTDRPRAD 392
+S DE + + PGD+ RT +PR +
Sbjct: 137 LSTLTDEDWNNIPEPGDLTRKKRTKQPRRE 166
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/84 (20%), Positives = 35/84 (41%)
Frame = +3
Query: 33 SQVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGK 212
S+V+ P E + Y++ + PI YFG+ H + + + L+H + ++
Sbjct: 646 SEVRIPVELAVKELENVIYNSKYEDHGKNLPINYFGLDHFIHLRVWYVLLHKIYFFIASA 705
Query: 213 VTNLDRVRGFRRSYM*TNSLRSSV 284
+L + Y+ LR +
Sbjct: 706 YFSLKNEKFENEFYLLAQDLRRKI 729
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +3
Query: 147 HLVKIPIGRGLVHHVDYWGEGKVTNLDRVRGFRRSYM*TNSLRSSVRATARESK 308
+L++ + R L+H VDY G+ + LD + R S + +SLRS ++ ++ K
Sbjct: 72 NLLRKTLNRPLLHEVDYHGK-SLEILDMLLQSRNSMI--SSLRSELQEKNQKDK 122
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 184 TTSITGEKEK*LTLTG*EAFVGATCERTVCARQ*GPQQ 297
TT++TGE LTLTG +G E+TV A+ G ++
Sbjct: 967 TTAMTGE----LTLTGKILRIGGLREKTVAAKLSGMKE 1000
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 24.6 bits (51), Expect = 8.4
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = -2
Query: 216 SLFLLPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGSLAQRRLPIFPLTVFLP 37
SL LP+N V + + S G + + T H SL FP+ +LP
Sbjct: 75 SLSTLPNNDISVGEYVEPLPSVPGWLKQNIFSHFGTRLLHYLRSL-------FPIMNWLP 127
Query: 36 GND*NWLSY 10
+ NWL Y
Sbjct: 128 RYNWNWLVY 136
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 327 TGILLGICSPLLWPLLTSANCSFTCSSDES 238
TG GI + LLW + S++C++ +S
Sbjct: 121 TGAYEGIAAGLLWASTAYISLSYSCANQKS 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,717
Number of Sequences: 5004
Number of extensions: 50038
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -