Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00901X
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 34 0.056
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 1.2
03_01_0170 + 1389759-1391159 30 1.2
03_02_0127 + 5777564-5779879 29 1.6
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 3.7
06_03_1056 + 27239176-27242361 27 6.4
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 27 6.4
06_01_1116 + 9197761-9199956 27 8.5
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 34.3 bits (75), Expect = 0.056
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Frame = +3
Query: 72 ASEPDYHTNEDLLYPYSPIP-YFGMYHLVKIPIGRGLVHHVDYWGEGKVTNLDRVRGFRR 248
AS P Y ++ + PY I +FG+ + G G + V EG++T L R G R
Sbjct: 248 ASSPIYEVSQ-INRPYGQIKRWFGIRLYYALRDGTGSSNVVASMSEGRLTTLLRSIGIGR 306
Query: 249 SYM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSDTAALKLLPSARGRSVRGALQ 428
T + + S R ++++ PT C +T+ + SA R+ +
Sbjct: 307 ERSNTGTNKLSCRGPRKKNR-PTKRLDCRPPVSTVDTAGAPLEGEEKASAANRAPVSGGR 365
Query: 429 TSPGLSTPPKDSSLP 473
SPGL P LP
Sbjct: 366 RSPGLKWPWLCPDLP 380
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 359 NWKCRCRPQTRRESCWVF 306
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>03_01_0170 + 1389759-1391159
Length = 466
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 300 PLLWPLLTSANCSFTCSSDESLLPCQG*SLFLLPSNRRGVP 178
PLL LL SA+ + +D LL C + +LP RR VP
Sbjct: 8 PLLLCLLASASAARFAPADNHLLACGATAPAVLPDGRRFVP 48
>03_02_0127 + 5777564-5779879
Length = 771
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 306 KYPTGFPSCLWTTATLPVTSDTAALKLLPSARGRSVRGALQTSPGLSTPPKDSS 467
K PT P+ L +PV S ++ LL S R+V+G L +SP T + S+
Sbjct: 210 KRPTSLPTKLNLIKQVPVPSQVSS-HLLSSKAKRTVKGELTSSPATVTGVRRSN 262
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 236 SYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWIQQVLI 96
S P F + D++Y STN + + T + W WI +VLI
Sbjct: 1085 SLPFASRAFQAHAIQDLLYLASTNNE-NRIALTSIAEWPEWILEVLI 1130
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 197 VIDVVYQPSTNRYLHEVVHTEVGYW 123
V D + S +R+LH HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -2
Query: 306 CSPLLWPLLTSANCSFTCSSDESLLPCQG*SLFLLPSNRRGVPALYQSVSSRGGT 142
C P L SA S + SSDE + P LP ++ GVP+L VS G+
Sbjct: 202 CDPFLQGSSCSAATSSSSSSDEEISP-------RLPPHKGGVPSLSDMVSLLTGS 249
>06_01_1116 + 9197761-9199956
Length = 731
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 144 YHLVKIPIGRGLVHHVDYWGEGKVTNLDR 230
Y +I I R LV H +Y+GEGK T L R
Sbjct: 646 YSSHQIIIAR-LVGHHEYYGEGKETKLQR 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,441
Number of Sequences: 37544
Number of extensions: 360534
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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