Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00901X
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    32   0.27 
U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    27   7.6  

>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = +3

Query: 276 SSVRATARESKYPTGFPSCLWTTATLPVTSDT--AALKLLPSARGRSVRGALQTSPGLST 449
           SS  +T   +   T  PS    T T+P T+    A + +          G L TS  + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398

Query: 450 PPKDSSLPTDIL 485
           PP   + P D L
Sbjct: 399 PPYPENCPEDSL 410


>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 296 KGEQIPNRIPXXXXXXXXXXXYIRYGGVKTVTISTGPISTRCAADVARIV 445
           + ++IPN +P             RYG VK V+ S GP+S     D  + V
Sbjct: 97  QNQEIPNSLPAENENSMKIAW--RYGNVKQVSSSLGPLSNENQYDFTKHV 144


>U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical
           protein F47E1.2 protein.
          Length = 744

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -2

Query: 501 MSSEFSEYP*ATTSPSEALTILATSAAHRVLIGPVLMVTVLT-PPYLM*LEVSLSSTDTT 325
           +S +F E    T+S    LT+L  S    + + P +++ + + PP    L + L     +
Sbjct: 587 VSKKFCENTCKTSSVIFFLTVLPGSFVAGLGVVPAMLILLRSVPPETRSLSLGLQGMAVS 646

Query: 324 GILLG-ICSPLLWPLLTSANC 265
             L G + SP+LW L+  A C
Sbjct: 647 --LFGTLPSPILWGLVIDAAC 665


>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 102 DLLYPYSPIPYFGMYHLVKIPIG 170
           DL+Y +  IPYF +  LV +P+G
Sbjct: 64  DLMYSFLLIPYFFIPTLVVLPVG 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,541
Number of Sequences: 27780
Number of extensions: 290689
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)