Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00901X
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.44 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.59 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.5  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 248 PTKASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEV 132
           PT  +   +   FSF     +VY+PS  R  HE+  T+V
Sbjct: 495 PTPTTESEERRFFSFHQWGILVYEPSACRPRHEIRSTDV 533


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 42  KTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGKVTN 221
           K     K    S+ + +  ED++ P      +  +  ++IPI R L        EG  T+
Sbjct: 146 KNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPN-DEGIETD 204

Query: 222 LDRVRG 239
            DR +G
Sbjct: 205 SDRRKG 210


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 395 STGPISTRCAADVARIVNASEGLVVAYGYSENSD 496
           +T PI+ RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -3

Query: 173 STNRYLHEVVHTEVGYWGVWIQQVLICVVVWLRGGFPFFL 54
           S +RY+H       G W      V    VVWL  G   F+
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLISFV 159


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 54  EEKWEAASEPDY 89
           EE+WE  +E DY
Sbjct: 343 EEEWENENESDY 354


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 253 TCERTVCARQ*GPQQGRANTQQDSRRVCGRQ 345
           TC  +   R  G    R + + +S   CGR+
Sbjct: 20  TCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 253 TCERTVCARQ*GPQQGRANTQQDSRRVCGRQ 345
           TC  +   R  G    R + + +S   CGR+
Sbjct: 20  TCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 114 PYSPIPYFGMYHLVKI 161
           PY  I + G+++LVKI
Sbjct: 293 PYLVINFSGIFNLVKI 308


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 258 TCSSDESLLPCQG 220
           TCS D S+  C+G
Sbjct: 59  TCSGDISVTKCEG 71


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 21  SFSHSQVKTPSEEKWE 68
           + SH+ +K P +E WE
Sbjct: 174 NLSHALLKDPVKEFWE 189


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 21  SFSHSQVKTPSEEKWE 68
           + SH+ +K P +E WE
Sbjct: 227 NLSHALLKDPVKEFWE 242


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 258 TCSSDESLLPCQG 220
           TCS D S+  C+G
Sbjct: 59  TCSGDISVTKCEG 71


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 114 PYSPIPYFGMYHLVKI 161
           PY  I + G+++LVKI
Sbjct: 43  PYLVINFSGIFNLVKI 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,011
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)