Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00899
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F2C944 Cluster: PREDICTED: similar to ADAM10; n=...    34   4.5  
UniRef50_P28348 Cluster: Nitrogen assimilation transcription fac...    33   5.9  
UniRef50_Q5W6L2 Cluster: Putative uncharacterized protein OSJNBb...    33   7.8  

>UniRef50_UPI0000F2C944 Cluster: PREDICTED: similar to ADAM10; n=2;
           Mammalia|Rep: PREDICTED: similar to ADAM10 - Monodelphis
           domestica
          Length = 768

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 307 GREAELGSSDSTSLCCLALRCYGLRCHRTRRAQCECESSKCCTY*CPFGS 456
           G E + GS  +   C  A    GLRC     AQC      CC   C + S
Sbjct: 452 GEECDAGSEPTDPCCYAAGETEGLRCKLKTGAQCSPSQGPCCGPDCKYFS 501


>UniRef50_P28348 Cluster: Nitrogen assimilation transcription factor
           nirA; n=6; Trichocomaceae|Rep: Nitrogen assimilation
           transcription factor nirA - Emericella nidulans
           (Aspergillus nidulans)
          Length = 892

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +2

Query: 185 PE-SADSPNAEGSDVEGRSTEPNRAGACRRRS*STDWIVC*PAGRPSSAVATLLACAVWH 361
           PE S+D P+ + S  +G+ T  + A A +RR  ST  I C    R S     L +CA   
Sbjct: 7   PELSSDGPHTKSSS-KGQGTSTDNAPASKRRCVSTACIAC--RRRKSKCDGNLPSCAACS 63

Query: 362 SV-ATACVVTGRVEPNANANR 421
           SV  T CV     +PN++  R
Sbjct: 64  SVYHTTCV----YDPNSDHRR 80


>UniRef50_Q5W6L2 Cluster: Putative uncharacterized protein
           OSJNBb0085A04.5; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBb0085A04.5 - Oryza sativa subsp. japonica (Rice)
          Length = 168

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +2

Query: 179 YTPESADSPNAEGSDVEGRSTEPNRAGACRRRS*STDWIVC*PAGRPSSAVATLLACAVW 358
           +TP      +  G  VEGRS+   R GA RR   +T W+    +G P S  AT      W
Sbjct: 85  WTPSRRGMASRPGEKVEGRSSTV-RKGAWRRWRGTTGWVDSVGSGTPDSGSATAAEGRRW 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,410,832
Number of Sequences: 1657284
Number of extensions: 12521893
Number of successful extensions: 36753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36306
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)