Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00899
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 305 PAGRPSSAVATLLACAV 355
           P G PSS V+ +L C V
Sbjct: 536 PPGGPSSHVSAVLTCKV 552



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 591 DFTKTLKRACADLPCHRVIFLLPL*SDDIPPVGE*LPSPMDISNARAKRAS 439
           DF+K  +++ AD     V    P      PP GE    P+D+S +  KR++
Sbjct: 207 DFSKRGQKSDADSDSDVVNLSKP----GTPPSGEPGNGPLDLSVSSRKRSN 253



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 476 GDGNHSPTGGMSS 514
           G GN+ P GG SS
Sbjct: 530 GSGNNQPPGGPSS 542


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 767 NSIENYKPMLHYTQTHTD 714
           NS+  YKP +H  +  T+
Sbjct: 147 NSLHKYKPTVHLVRVGTE 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,970
Number of Sequences: 336
Number of extensions: 3212
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)